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Report for CCDS20872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20872.1 Public Mus musculus 7 Psg25 23 108 98 CCDS HistoryNCBI Gene:114868Re-query CCDS DB by CCDS ID:20872.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094795.4 ENSMUSP00000092389.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094795.4Link to Ensembl Protein Viewer:ENSMUSP00000092389.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094795Re-query CCDS DB by Protein ID:ENSMUSP00000092389
Original member Current member NCBI NM_054060.1 NP_473401.1 Accepted alive Link to Nucleotide Sequence:NM_054060.1Link to Protein Sequence:NP_473401.1Re-query CCDS DB by Nucleotide ID:NM_054060Re-query CCDS DB by Protein ID:NP_473401Link to BLAST:NP_473401.1

Chromosomal Locations for CCDS 20872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 18521162 18521445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18524606 18524965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18526188 18526547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18529473 18529832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18531985 18532048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGTGGTGTCCTTTGAACTTTTCAGCAAAGTGTGTACCTCCTGGCAGAGGGTCCTGCTCACAGCCTCCA
TCTTAACCTACTGGCTCCTGCCCACCACTGCCAGAGTCATCATCCATTCTTTACCACTCCAAGTGGTTGA
AGGAGAAAATGTTCTTCTACATGTTTACAATCTGCCAGAGAATCTTCTAGGCCTTGCCTGGTACAGAGGG
TTGCTAAATTTGAAACTTGGAATTGCACTGTATTCACTACAATATAATGTAAGTGTGACTGGACCTGAGC
ACAGCGGTAGAGAGACATTGCACAGAAATGGGTCTCTGTGGATCCAAAATGTCACCCAGGAGGACACAGG
ATATTACACTCTTCGTACCATAAGTAAAAATGGAAAACTGGAATCAAATACATCCATGTTCCTTCAGGTG
TACTCCTCTACTTTCATCTGTGGACACCCTTTCTTCCCTGCCAAGCTCACTATTGAATCAGTGCCACCCA
GCGTTGCTGCAGGGGGAAGCGTTCTTCTCCGTGTTCACAATCTTCCAGAGCATCTTCAATCGCTATTCTG
GTACAAAGGACTGATTGTATTTAACAAGGTTGAGATTGCTCGATACAGAACAGCCAAGAATTCAAGTGAG
CCAGGTCATGCTCACAGTGGTAGAGAGACAGTGTACAGCAATGGATCCCTGCTGCTTCAGGATGTCACCT
GGAAAGACACAGGATTCTATACCCTACGAACTCTGAATAGATATCGGAAAATGAAATTAGCACACATTTA
CCTTCAGGTGGACACCCCCCTTTCCTTGTGCTGTGATACTCTTGACTTTGCCCAACTCAGCATCGATCCA
GTGCCACGGTATGCTGTCGAAGGGGGAAGTGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATCTGCAAA
CCTTTTCCTGGTACAAAGGTGTGCATAACACTCATGGCTTTAAAATTGCAGAATATAGCATAGCGACGAA
GTCCATCATCAGCGGCCGTGCACACAGCAGAAGAGAGATAGGGTACACCGATGGATCCCTGCTGCTCCAG
GATGTCACTGAGAAAGACTCTGGCTTGTACACACTAATAGCAATAGACAGCAATGTGAGAGTTGTAAGAG
CACACGTCCAAGTCAACGTCCACAAGCTTGTGACACAGCCTGTTGTGAGAGTCACGGACACTACAGTTCG
AGTACAGAGCTCAGTTGTCTTCACTTGCTTCTCAGACAACACCAGGATCTCCATCCGTTGGCTCTTCAAC
AATCAGAATCTGCAGCTCACAGAGAGGATGACCCTGTCCCCATCAAAGTGCCAACTCAGGATACATACTG
TGAGGAAGGAGGATGCTGGAGAGTATCAATGTGAGGCCTTCAACCCAGTCAGCTCAAAGACCAGTCTCCC
AGTCAGCCTGGCCGTGATGAATGAGTGA

Translation (475 aa):
MVVSFELFSKVCTSWQRVLLTASILTYWLLPTTARVIIHSLPLQVVEGENVLLHVYNLPENLLGLAWYRG
LLNLKLGIALYSLQYNVSVTGPEHSGRETLHRNGSLWIQNVTQEDTGYYTLRTISKNGKLESNTSMFLQV
YSSTFICGHPFFPAKLTIESVPPSVAAGGSVLLRVHNLPEHLQSLFWYKGLIVFNKVEIARYRTAKNSSE
PGHAHSGRETVYSNGSLLLQDVTWKDTGFYTLRTLNRYRKMKLAHIYLQVDTPLSLCCDTLDFAQLSIDP
VPRYAVEGGSVLLQVHNLPEDLQTFSWYKGVHNTHGFKIAEYSIATKSIISGRAHSRREIGYTDGSLLLQ
DVTEKDSGLYTLIAIDSNVRVVRAHVQVNVHKLVTQPVVRVTDTTVRVQSSVVFTCFSDNTRISIRWLFN
NQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVSLAVMNE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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