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Report for CCDS48519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48519.1 Public Mus musculus 10 Semp2l2b 23 108 98 CCDS HistoryNCBI Gene:114671Re-query CCDS DB by CCDS ID:48519.1See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 48519.1
This single-exon gene appears to be a retrogene of multi-exon Senp (SUMO1/sentrin specific peptidase) gene family, with Senp2 the closest relative.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092672.5 ENSMUSP00000097613.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092672.5Link to Ensembl Protein Viewer:ENSMUSP00000097613.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092672Re-query CCDS DB by Protein ID:ENSMUSP00000097613
Original member Current member NCBI NM_053264.2 NP_444494.1 Accepted alive Link to Nucleotide Sequence:NM_053264.2Link to Protein Sequence:NP_444494.1Re-query CCDS DB by Nucleotide ID:NM_053264Re-query CCDS DB by Protein ID:NP_444494Link to BLAST:NP_444494.1

Chromosomal Locations for CCDS 48519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 22066592 22068079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGTGGCAACCTAAACAGCCTGGGTTGGAGATGAAGCCTGAAGCTTCAGGAATAGGGCAAAAAAGAAAAT
ACCACGATGAAAGTGTGACAGAGATAGAGTCTGAACCTTTGGGACAAGAACCAAAAAGGAAATGCCAGGA
TGGAACAGGGATGGTATTTAAAGAGCCTGGCAAGGAGCCTCGAGATCAAGAGCTCCCGAGAGAACATCCT
AGCAAGGGTCAGGTACGGAAACCCCAGGGAAAGACTCCAAAACAACTAGAACCCCTAGAGTTGACCGAAG
GATCTCCAGAGCAGGTTGTAACTGGGAGGAAGCCTGCTGATGGTGGCAAGGGTCACAAGCGGCCCTATTC
CGTCATGGAAGAAAACGAACAAAGCCCCCAAAAGGAAAAATACGGAAGGTTGCTTCAACACCTTCAGTGC
GACCAAGATGTGAGTTCAGACCCACACAGGCCTCACCCGTTCCTTACAAACACCTGGAAGATCAAAGGGG
GCGAGTCAGAAGACAGTCGTGGATCAGAAAGAACTCAGAGCGATCGAGAACCATCTACTGTTGTTGCTCT
AAAAGAATGTCTTTCACCAGAGGAGAGAGAGAAGTGCTGTTCTGAGGAGAAATGTGTTACAGAGAAGAAA
GATTGTATAAAGGGTGAAGGAAGAAGGGGGAACAGCTTGGAGCCTGATTTACCAGGAACACAGGCTCAGA
TCATCCTGGATAGTGGCAAAGGCAATAGCTTATTCCCCAATAAGGTGGCAGTCCTTGCGGCAGAGAAAAA
GCCTATTACAGACCGAGGAAAAGGCAGAGAAATGGATCAAATCCTTGATATTACAGAGGACATGGAGAAG
GAAATTGAGAATGCATTGGGTCCAGGACCCCAAGAGGAAATCCTAAGTTCCAGATTCAAGTTGCAAATCA
GCAGAGGAGACATCCAGACGCTGGAGAACGGTCAGTGGCTCAATGATGAGGTCATCAATTTCTACATGAA
CCTTCTGGTTGAGAGAAATGAAAACCAAGGCTACCCGGCTCTGCATGTCTTTAGCACTTTCTTTTACCCC
AAGCTAAAGCATGGCGGTTACAGTTCCGTGAAAAGATGGACTCGAGGCATCAATCTCTTTGAAAAAGAAC
TCATCTTGGTGCCTATTCACCAGAGGGTACACTGGAGCCTGGTGGTAATCGATTTAAGAAAACGAAGTAT
TGTATACCTCGATTCCATGGGGCAGACAGGGAAGTCTATCTGTGAGACCATCTTCCAATATTTACAAAAT
GAGAGCAAGACACGCAGGAACGTTGAGCTGGACCCTTTGGAGTGGAAGCAGTACAGTGTGACATCAGAGG
AGATTCCTCTGCAACTGAATGGGAGTGACTGTGGAATGTTTACCTGTAAATATGCAGATTACATCGCTAG
GGACCAGCCTGTGACCTTTTCTCAGCAACACATGCCCACCTTCAGGAAGAGGATGGTCTGGGAAATCCTG
CACAGTCAATTACTGTAA

Translation (495 aa):
MWQPKQPGLEMKPEASGIGQKRKYHDESVTEIESEPLGQEPKRKCQDGTGMVFKEPGKEPRDQELPREHP
SKGQVRKPQGKTPKQLEPLELTEGSPEQVVTGRKPADGGKGHKRPYSVMEENEQSPQKEKYGRLLQHLQC
DQDVSSDPHRPHPFLTNTWKIKGGESEDSRGSERTQSDREPSTVVALKECLSPEEREKCCSEEKCVTEKK
DCIKGEGRRGNSLEPDLPGTQAQIILDSGKGNSLFPNKVAVLAAEKKPITDRGKGREMDQILDITEDMEK
EIENALGPGPQEEILSSRFKLQISRGDIQTLENGQWLNDEVINFYMNLLVERNENQGYPALHVFSTFFYP
KLKHGGYSSVKRWTRGINLFEKELILVPIHQRVHWSLVVIDLRKRSIVYLDSMGQTGKSICETIFQYLQN
ESKTRRNVELDPLEWKQYSVTSEEIPLQLNGSDCGMFTCKYADYIARDQPVTFSQQHMPTFRKRMVWEIL
HSQLL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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