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Report for CCDS27954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27954.1 Public Mus musculus 16 Prm3 23 108 98 CCDS HistoryNCBI Gene:19120Re-query CCDS DB by CCDS ID:27954.1Re-query CCDS DB by GeneID:19120See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050864.6 ENSMUSP00000059630.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050864.6Link to Ensembl Protein Viewer:ENSMUSP00000059630.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050864Re-query CCDS DB by Protein ID:ENSMUSP00000059630
Original member Current member NCBI NM_013638.2 NP_038666.2 Accepted alive Link to Nucleotide Sequence:NM_013638.2Link to Protein Sequence:NP_038666.2Re-query CCDS DB by Nucleotide ID:NM_013638Re-query CCDS DB by Protein ID:NP_038666Link to BLAST:NP_038666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038666.2 101 Q62100 101 100% 0 0

Chromosomal Locations for CCDS 27954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10790584 10790889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGGGTTCCCGCTGTGCCAAGCTCAGCACTGGCCATGGCCCAGCCCAGAACACTGGTCACAGCCGTGGCC
AC
GAGTCCTCCATGAAGAAGCTCGTGGCCTGTGTGAGTCAAGACAACTTTTCCCTGTCATCAGAGGGCGA
G
GAAGAGGAGGAGGACGAGGAAGAGGAGGAGGAGGAAGAAGAAGAAGAGGAAGAGGAGCAAATCCCGGTG
AAG
GGCAAGCTGCTGCTGCTGGAGCCCGAAAAGCAAGAGAGCGCCGAGGATGGGGAGGCCCAGCCAAGCC
CC
GAGCCCAAGCAGACACACTCCTGA


Translation (101 aa):
MGSRCAKLSTGHGPAQNTGHSRGHESSMKKLVACVSQDNFSLSSEGEEEEEDEEEEEEEEEEEEEEQIPV
K
GKLLLLEPEKQESAEDGEAQPSPEPKQTHS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser