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Report for CCDS37950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37950.1 Public Mus musculus 19 Jak2 23 108 98 CCDS HistoryNCBI Gene:16452Re-query CCDS DB by CCDS ID:37950.1Re-query CCDS DB by GeneID:16452See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37950.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025705.6 ENSMUSP00000025705.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025705.6Link to Ensembl Protein Viewer:ENSMUSP00000025705.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025705Re-query CCDS DB by Protein ID:ENSMUSP00000025705
Original member Current member EBI ENSMUST00000065796.9 ENSMUSP00000064394.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065796.9Link to Ensembl Protein Viewer:ENSMUSP00000064394.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000065796Re-query CCDS DB by Protein ID:ENSMUSP00000064394
Original member Current member EBI ENSMUST00000238009.1 ENSMUSP00000158242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238009.1Link to Ensembl Protein Viewer:ENSMUSP00000158242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238009Re-query CCDS DB by Protein ID:ENSMUSP00000158242
Original member Current member NCBI NM_001048177.3 NP_001041642.1 Accepted alive Link to Nucleotide Sequence:NM_001048177.3Link to Protein Sequence:NP_001041642.1Re-query CCDS DB by Nucleotide ID:NM_001048177Re-query CCDS DB by Protein ID:NP_001041642Link to BLAST:NP_001041642.1
Original member Current member NCBI NM_008413.4 NP_032439.2 Accepted alive Link to Nucleotide Sequence:NM_008413.4Link to Protein Sequence:NP_032439.2Re-query CCDS DB by Nucleotide ID:NM_008413Re-query CCDS DB by Protein ID:NP_032439Link to BLAST:NP_032439.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041642.1 1132 Q62120 1132 100% 0 0
NP_032439.2 1132 Q62120 1132 100% 0 0

Chromosomal Locations for CCDS 37950.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29262208 29262433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29271351 29271474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29275002 29275119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29276750 29276895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29282317 29282638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29283542 29283661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29284837 29284994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29286301 29286412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29287901 29288087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29288674 29288801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29291167 29291301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29294856 29294943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29295642 29295769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29296510 29296648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29298293 29298444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29298588 29298738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29299479 29299615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29300909 29301098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29301612 29301736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29301899 29302071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29309595 29309712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29310928 29311041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29311741 29311848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3399 nt):
ATGGGAATGGCCTGCCTTACAATGACAGAAATGGAGGCAACCTCCACATCTCCTGTACATCAGAATGGTG
ATATTCCTGGAAGTGCTAATTCTGTGAAGCAGATAGAGCCAGTCCTTCAAGTGTATCTGTACCATTCTCT
TGGGCAAGCTGAAGGAGAGTATCTGAAGTTTCCAAGTGGAGAGTATGTTGCAGAAGAAATTTGTGTGGCT
GCTTCTAAAGCTTGTGGTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGA
TCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG
GTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCT
GAAGCTCCTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTGCTCAGTGGCGGCATGATTTTGTTCACG
GATGGATAAAAGTACCTGTGACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCGGTGTTAGACATGAT
GAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAGCTACAAGACATTCTTA
CCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTC
GCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAA
CCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCA
GGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATA
AGGAAAGTGAGACACTGACAGAACAGGACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAG
TATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAA
GTTTTGGAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACA
GACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACA
CAGCAACTGCCACGGCCCAATATCAATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACT
GGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGCGAG
AAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGAC
TAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGT
ATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAGATAAATCAAACCTTCTCGTCTTCAGAA
CAAATGGTATTTCTGATGTTCAGATCTCACCAACATTACAGAGGCATAATAATGTGAATCAAATGGTGTT
TCACAAAATCAGGAATGAAGATTTAATATTTAATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTT
AAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAG
ATAAAGCACATAGGAACTATTCAGAGTCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAA
GCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGAACATTCTGGTTCAAGAATTTGTAAAA
TTTGGATCACTGGATACATACCTGAAGAAGAACAAAAATTCCATAAATATATTATGGAAACTTGGAGTGG
CTAAGCAGTTGGCATGGGCCATGCATTTTCTAGAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAA
AAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCT
GGCATTAGCATTACAGTTCTACCGAAGGACATTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCA
TTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTG
CAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGAAAGCTGCAGTTCTATGAAGATAAGCAT
CAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATT
TCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAGATTATGAACTACTAAC
AGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGAC
CCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAAGGTAACTTCGGGAGTGTGG
AGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAG
CACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATC
GTCAAGTACAAGGGAGTGTGCTACAGTGCGGGTCGGCGCAACCTAAGATTAATTATGGAATATTTACCAT
ATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACAC
ATCTCAGATATGCAAGGGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGG
AACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGG
ACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTGGTACGCACCTGAATCCTTGAC
GGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTATACGAACTTTTCACATAC
ATCGAGAAGAGTAAAAGTCCACCCGTGGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGA
TTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGA
GATTTATGTGATCATGACAGAGTGCTGGAACAACAATGTGAGCCAGCGTCCCTCCTTCAGGGACCTTTCC
CTTCGGGTGGATCAAATCCGGGACAGTATAGCTGCGTGA

Translation (1132 aa):
MGMACLTMTEMEATSTSPVHQNGDIPGSANSVKQIEPVLQVYLYHSLGQAEGEYLKFPSGEYVAEEICVA
ASKACGITPVYHNMFALMSETERIWYPPNHVFHIDESTRHDILYRIRFYFPHWYCSGSSRTYRYGVSRGA
EAPLLDDFVMSYLFAQWRHDFVHGWIKVPVTHETQEECLGMAVLDMMRIAKEKDQTPLAVYNSVSYKTFL
PKCVRAKIQDYHILTRKRIRYRFRRFIQQFSQCKATARNLKLKYLINLETLQSAFYTEQFEVKESARGPS
GEEIFATIIITGNGGIQWSRGKHKESETLTEQDVQLYCDFPDIIDVSIKQANQECSNESRIVTVHKQDGK
VLEIELSSLKEALSFVSLIDGYYRLTADAHHYLCKEVAPPAVLENIHSNCHGPISMDFAISKLKKAGNQT
GLYVLRCSPKDFNKYFLTFAVERENVIEYKHCLITKNENGEYNLSGTKRNFSNLKDLLNCYQMETVRSDS
IIFQFTKCCPPKPKDKSNLLVFRTNGISDVQISPTLQRHNNVNQMVFHKIRNEDLIFNESLGQGTFTKIF
KGVRREVGDYGQLHKTEVLLKVLDKAHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGEENILVQEFVK
FGSLDTYLKKNKNSINILWKLGVAKQLAWAMHFLEEKSLIHGNVCAKNILLIREEDRRTGNPPFIKLSDP
GISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDKH
QLPAPKWTELANLINNCMDYEPDFRPAFRAVIRDLNSLFTPDYELLTENDMLPNMRIGALGFSGAFEDRD
PTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI
VKYKGVCYSAGRRNLRLIMEYLPYGSLRDYLQKHKERIDHKKLLQYTSQICKGMEYLGTKRYIHRDLATR
NILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY
IEKSKSPPVEFMRMIGNDKQGQMIVFHLIELLKSNGRLPRPEGCPDEIYVIMTECWNNNVSQRPSFRDLS
LRVDQIRDSIAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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