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Report for CCDS87814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87814.1 Public Mus musculus 1 Trpa1 23 108 98 CCDS HistoryNCBI Gene:277328Re-query CCDS DB by CCDS ID:87814.1Re-query CCDS DB by GeneID:277328See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235071.1 ENSMUSP00000157371.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235071.1Link to Ensembl Protein Viewer:ENSMUSP00000157371.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235071Re-query CCDS DB by Protein ID:ENSMUSP00000157371
Original member Current member NCBI NM_001348288.1 NP_001335217.1 Accepted alive Link to Nucleotide Sequence:NM_001348288.1Link to Protein Sequence:NP_001335217.1Re-query CCDS DB by Nucleotide ID:NM_001348288Re-query CCDS DB by Protein ID:NP_001335217Link to BLAST:NP_001335217.1

Chromosomal Locations for CCDS 87814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 14873506 14873728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14874364 14874461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14875849 14875959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14880199 14880267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14881597 14881779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14882112 14882241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14884110 14884279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14886887 14887052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14887595 14887665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14889394 14889492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14890395 14890454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14891305 14891398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14893183 14893349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14896492 14896606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14898009 14898173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14898256 14898425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14899347 14899447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14900065 14900164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14901862 14901910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14903146 14903282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14904147 14904292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14904453 14904561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14905923 14906030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14910730 14910905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14912360 14912519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14918725 14918835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3288 nt):
ATGAAGCGCGGCTTGAGGAGGATTCTGCTCCCGGAGGAAAGGAAGGAGGTCCAGGGCGTTGTCTATCGCG
GCGTCGGGGAAGACATGGACTGCTCCAAGGAATCCTTTAAGGTGGACATTGAAGGAGATATGTGTAGATT
AGAAGACTTCATCAAGAACCGAAGAAAACTAAGCAAATATGAGGATGAAAATCTCTGTCCTCTGCATCAC
GCAGCAGCAGAAGGTCAAGTTGAACTGATGGAACTGATCATCAATGGTTCTTCGTGTGAAGTGCTGAATA
TAATGGATGGTTATGGAAATACCCCACTGCATTGTGCTGCAGAAAAAAATCAAGTTGAAAGTGTAAAGTT
TCTTCTCAGCCAAGGAGCAAATCCAAACCTCCGAAATAGAAACATGATGTCACCCCTTCACATAGCTGTG
CATGGCATGTACAACGAAGTGATCAAGGTGTTGACTGAGCACAAGGCCACTAACATCAATTTAGAAGGAG
AGAATGGGAACACGGCTTTGATGTCCACGTGTGCCAAAGACAACAGTGAAGCTTTGCAAATTTTGTTAGA
AAAAGGAGCTAAGCTGTGTAAATCAAATAAGTGGGGAGACTACCCTGTGCACCAGGCAGCATTTTCAGGT
GCCAAAAAATGCATGGAATTAATCTTAGCATATGGTGAAAAGAACGGCTACAGCAGGGAGACTCACATTA
ATTTTGTGAATCACAAGAAAGCCAGCCCTCTCCACCTAGCAGTTCAAAGCGGAGACTTGGACATGATTAA
GATGTGCCTGGACAACGGTGCACACATCGACATGATGGAGAATGCCAAATGCATGGCCCTCCATTTTGCT
GCAACCCAGGGAGCCACTGACATCGTTAAGCTCATGATCTCATCCTATACCGGAAGTAGTGATATTGTGA
ATGCAGTTGATGGCAATCAGGAGACCCTGCTTCACAGAGCCTCGTTATTTGATCACCATGACCTGGCAGA
ATACCTAATATCAGTGGGAGCAGACATCAACAGCACTGATTCTGAAGGACGCTCTCCACTTATTTTAGCA
ACAGCTTCTGCATCCTGGAACATTGTGAATTTGCTCCTCTGTAAAGGTGCCAAAGTAGACATAAAAGATC
ATCTTGGACGTAACTTTTTGCATTTGACTGTGCAGCAGCCTTATGGACTAAGAAATTTGCGGCCTGAGTT
TATGCAGATGCAACACATCAAAGAGCTGGTGATGGATGAAGACAATGACGGATGCACACCTCTCCATTAT
GCCTGTAGGCAGGGGGTTCCTGTCTCTGTAAATAACCTCCTTGGCTTCAATGTGTCCATTCATAGCAAAA
GTAAAGATAAGAAGTCGCCCCTGCATTTTGCAGCCAGTTATGGGCGCATCAATACATGTCAGAGACTTCT
GCAAGACATAAGTGATACGAGGCTTTTGAATGAAGGGGATCTCCATGGGATGACCCCTCTCCACCTGGCA
GCAAAAAATGGGCATGATAAAGTCGTTCAACTCCTTCTGAAGAAAGGGGCCTTATTTCTCAGTGACCACA
ATGGCTGGACTGCTTTGCATCACGCCTCCATGGGTGGGTACACTCAGACCATGAAGGTCATTCTTGATAC
TAACTTGAAATGCACAGACCGACTAGATGAAGAAGGGAACACAGCACTCCACTTTGCAGCACGGGAAGGC
CATGCCAAGGCTGTTGCAATGCTTTTGAGCTACAATGCTGACATCCTCCTGAACAAGAAGCAAGCTTCCT
TTCTGCATATTGCCCTGCACAATAAGCGCAAGGAAGTGGTTCTCACAACCATCAGAAATAAAAGATGGGA
TGAGTGTCTTCAAGTTTTCACTCATAATTCTCCAAGCAATCGATGTCCAATCATGGAGATGGTAGAATAC
CTCCCCGAGTGCATGAAAGTTCTTTTAGATTTCTGCATGATACCTTCCACAGAAGACAAGTCCTGTCAAG
ACTACCATATTGAGTATAATTTCAAGTATCTCCAATGCCCATTATCCATGACCAAAAAAGTAGCACCTAC
CCAGGATGTGGTATATGAGCCTCTTACAATCCTCAATGTCATGGTCCAACATAACCGCATAGAACTCCTC
AACCACCCTGTGTGTAGGGAGTACTTACTCATGAAATGGTGTGCCTATGGATTCAGAGCCCATATGATGA
ACCTAGGATCTTATTGTCTTGGTCTCATACCCATGACCCTTCTTGTTGTCAAAATACAGCCTGGAATGGC
CTTCAATTCTACTGGAATAATCAATGGAACTAGTAGTACTCATGAGGAAAGAATAGACACTCTGAAAAGG
AATTACTTCCTGGATTACAACAATGCTCTGGAATGGGTTATCTATACAACTAGTATCATCTTCGTGTTGC
CCTTGTTCCTCAACATCCCAGCGTATATGCAGTGGCAATGTGGAGCAATAGCGATATTCTTCTACTGGAT
GAACTTCCTACTGTATCTTCAAAGGTTTGAGAACTGTGGAATTTTCATTGTTATGTTGGAGGTGATTTTT
AAAACATTGCTGAGATCGACCGGAGTGTTTATCTTCCTCCTACTGGCTTTTGGCCTCAGCTTTTATGTTC
TCCTGAATTTCCAAGATGCCTTCAGCACCCCATTGCTTTCCTTAATCCAGACATTCAGTATGATGCTAGG
AGACATCAATTATCGAGATGCCTTCCTAGAACCATTGTTTAGAAATGAGTTGGCATACCCAGTCCTGACC
TTTGGGCAGCTTATTGCCTTCACAATGTTTGTCCCAATTGTTCTCATGAACTTACTGATTGGCTTGGCGG
TTGGGGACATTGCTGAGGTCCAGAAGCATGCGTCATTGAAGAGGATTGCTATGCAGGTGGAACTTCATAC
CAACTTAGAAAAAAAGCTGCCACTCTGGTACTTACGCAAAGTGGATCAGAGGTCCACCATCGTGTATCCA
AATAGACCCAGGCACGGCAGGATGCTACGGTTTTTTCATTACTTTCTTAATATGCAAGAAACACGACAAG
AAGTACCAAACATTGACACATGCTTGGAAATGGAAATATTGAAACAGAAATATCGGCTGAAGGACCTCAC
TTCCCTCTTGGAAAAGCAGCATGAGCTCATCAAACTCATCATCCAGAAGATGGAGATCATCTCAGAGACA
GAAGATGAAGATAACCATTGCTCTTTCCAAGACAGGTTCAAGAAGGAGAGGCTGGAACAGATGCACAGCA
AGTGGAATTTTGTCTTAAACGCAGTTAAGACTAAAACACATTGTTCTATTAGCCACCCGGACTTTTAG

Translation (1095 aa):
MKRGLRRILLPEERKEVQGVVYRGVGEDMDCSKESFKVDIEGDMCRLEDFIKNRRKLSKYEDENLCPLHH
AAAEGQVELMELIINGSSCEVLNIMDGYGNTPLHCAAEKNQVESVKFLLSQGANPNLRNRNMMSPLHIAV
HGMYNEVIKVLTEHKATNINLEGENGNTALMSTCAKDNSEALQILLEKGAKLCKSNKWGDYPVHQAAFSG
AKKCMELILAYGEKNGYSRETHINFVNHKKASPLHLAVQSGDLDMIKMCLDNGAHIDMMENAKCMALHFA
ATQGATDIVKLMISSYTGSSDIVNAVDGNQETLLHRASLFDHHDLAEYLISVGADINSTDSEGRSPLILA
TASASWNIVNLLLCKGAKVDIKDHLGRNFLHLTVQQPYGLRNLRPEFMQMQHIKELVMDEDNDGCTPLHY
ACRQGVPVSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLA
AKNGHDKVVQLLLKKGALFLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEEGNTALHFAAREG
HAKAVAMLLSYNADILLNKKQASFLHIALHNKRKEVVLTTIRNKRWDECLQVFTHNSPSNRCPIMEMVEY
LPECMKVLLDFCMIPSTEDKSCQDYHIEYNFKYLQCPLSMTKKVAPTQDVVYEPLTILNVMVQHNRIELL
NHPVCREYLLMKWCAYGFRAHMMNLGSYCLGLIPMTLLVVKIQPGMAFNSTGIINGTSSTHEERIDTLKR
NYFLDYNNALEWVIYTTSIIFVLPLFLNIPAYMQWQCGAIAIFFYWMNFLLYLQRFENCGIFIVMLEVIF
KTLLRSTGVFIFLLLAFGLSFYVLLNFQDAFSTPLLSLIQTFSMMLGDINYRDAFLEPLFRNELAYPVLT
FGQLIAFTMFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTNLEKKLPLWYLRKVDQRSTIVYP
NRPRHGRMLRFFHYFLNMQETRQEVPNIDTCLEMEILKQKYRLKDLTSLLEKQHELIKLIIQKMEIISET
EDEDNHCSFQDRFKKERLEQMHSKWNFVLNAVKTKTHCSISHPDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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