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Report for CCDS24450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24450.1 Public Mus musculus 11 Dnaaf10 23 108 98 CCDS HistoryNCBI Gene:103784Re-query CCDS DB by CCDS ID:24450.1Re-query CCDS DB by GeneID:103784See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046955.6 ENSMUSP00000040938.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046955.6Link to Ensembl Protein Viewer:ENSMUSP00000040938.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046955Re-query CCDS DB by Protein ID:ENSMUSP00000040938
Original member Current member NCBI NM_178909.4 NP_849240.1 Accepted alive Link to Nucleotide Sequence:NM_178909.4Link to Protein Sequence:NP_849240.1Re-query CCDS DB by Nucleotide ID:NM_178909Re-query CCDS DB by Protein ID:NP_849240Link to BLAST:NP_849240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849240.1 357 Q8BGF3 357 100% 0 0

Chromosomal Locations for CCDS 24450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 17211964 17212146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17219014 17219114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17222197 17222327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17224549 17224650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17227161 17227276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17228141 17228275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17229769 17229866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17232707 17232914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGTCCACCTTCGAGAAGCCTCAGATCATTGTCCACATTCAAAAGGGCCTCAACTACACAGTGTTCGACA
GCAAATGGGTGCCCTGCAGTGCCAAATTCGTGACGATGGGCAACTTTGCCCGGGGCACCGGCGTTATCCA
GGTGTACGAGATCCAGCGCGGGGACCTCAAGCTGCTGCGGGAGATTGAAAAGGCCAAGCCCATTAAATGT
GGAACATTTGGTGCCGCATCTCTGCAGCAGAGATTCTTAGCTACTGGAGATTTTGGTGGAAATCTTCATA
TATGGAACTTGGAAGCTCCAGAGATGCCAGTGTATTCTGTAAAGGGCCACAAAGAAATCATAAATACCAT
AGATGGTGTAGGTGGACTTGGAATTGGGGAAGGAGCCCCTGAAATCGTGACGGGCAGCCGTGATGGAACT
GTAAAGGTGTGGGACCCAAGGCAAAAAGAGGATCCTGTCGCTAACATGGAACCTGCACAAGGAGAAAACA
AGAGAGACTGTTGGACCGTGGCATTTGGCAATGCTTATAATCAAGAAGAACGTGTTGTCTGTGCTGGCTA
TGACAATGGGGACATCAAGCTGTTTGACCTCAGGAACATGTCACTGCGGTGGGAGACAAACATTAAAAAT
GGGGTATGCAGCTTGGAATTTGACAGAAAGGACATCAGTATGAATAAGTTGGTAGCTACATCTCTAGAAG
GGAAGTTCCACGTCTTCGACATGAGAACACAGCATCCTACCAAGGGCTTTGCTTCTGTTACAGAAAAGGC
CCATAAATCCACTGTATGGCAAGTCCGGCACCTGCCTCAAAACAGGGAGATCTTTCTGACAACGGGAGGC
GCTGGGAGTCTTCACCTCTGGAAGTATGAATACCCAACTCAGCGGTCAAAGAAAGATTCCGAGGGCTTGG
AGATGGGAGTCGCAGGTTCCGTCAGCCTTCTGCAGAACGTGACCGTGTCTACTCAGCCCATCTCCAGTTT
GGACTGGAGTCCTGACAAAAGGGGGCTCTGCGTCTGTAGTTCATTTGACCAGATGGTGCGTGTGCTGATA
GTTACAAAGCTCCAGACCATTTGA

Translation (357 aa):
MSTFEKPQIIVHIQKGLNYTVFDSKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIEKAKPIKC
GTFGAASLQQRFLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINTIDGVGGLGIGEGAPEIVTGSRDGT
VKVWDPRQKEDPVANMEPAQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKN
GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVTEKAHKSTVWQVRHLPQNREIFLTTGG
AGSLHLWKYEYPTQRSKKDSEGLEMGVAGSVSLLQNVTVSTQPISSLDWSPDKRGLCVCSSFDQMVRVLI
VTKLQTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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