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Report for CCDS17384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17384.1 Public Mus musculus 3 Vmn2r1 23 108 98 CCDS HistoryNCBI Gene:56544Re-query CCDS DB by CCDS ID:17384.1Re-query CCDS DB by GeneID:56544See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17384.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029406.5 ENSMUSP00000029406.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029406.5Link to Ensembl Protein Viewer:ENSMUSP00000029406.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029406Re-query CCDS DB by Protein ID:ENSMUSP00000029406
Original member Current member NCBI NM_019918.2 NP_064302.2 Accepted alive Link to Nucleotide Sequence:NM_019918.2Link to Protein Sequence:NP_064302.2Re-query CCDS DB by Nucleotide ID:NM_019918Re-query CCDS DB by Protein ID:NP_064302Link to BLAST:NP_064302.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064302.2 912 O70410 912 98.7939% 0 11

Chromosomal Locations for CCDS 17384.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 64081642 64081877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64086471 64086762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64089453 64090325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64101303 64101533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64102975 64103098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64104476 64105458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2739 nt):
ATGGCCAGCAGACAGATAAGCTTAGCTTTAGGATTTCTTGCATTTTTGTGGGCTGTATTGGGTGCTCAAA
ACAAAACAGAGGAAGTACAATGCAGATTGATGGCCAAGTTTAATTTGTCTGGATATGTAGATGCCAAAAA
TCATTCACTTGTTATTGCAGGACTGTTTCCTATCCACTCCAGAATCATCCCAGTAGATGAAGCTATTTTG
GAGCCGGTATCACCCATGTGTGAAGGGTTTAATTTCCGGGGTTTCCGATGGATGAAAACCATGATCCACA
CCATTAAGGAGATTAATGAGAGGAAGGACATTTTGCCCAACCATACTCTGGGCTACCAGATCTTTGATTC
CTGCTATACCATCTCCAAAGCAATGGAGTCATCTTTGGTGTTTCTTACTGGGCAGGAAGAATTCAAACCC
AATTTTAGAAATAGCACTGGATCAACTCTAGCAGCACTGGTTGGATCAGGGGGATCATCTTTGTCAGTTG
CTGCTTCACGAATTCTAGGGTTGTATTATATGCCTCAGGTGGGCTATACTTCTTCCTGCTCAATTCTTAG
TGACAAATTCCAGTTTCCATCTTATCTTCGTGTACTACCCAGTGATAACCTCCAGTCTGAGGCCATAGTG
AATCTCATCAAACACTTCGGTTGGGTCTGGGTAGGTGCTATTGCAGCTGATGATGATTATGGGAAATATG
GAGTAAAAACTTTTAAGGAAAAAATGGAGAGTGCCAACCTCTGTGTTGCTTTCTCTGAAACCATTCCCAA
AGTCTACTCCAATGAGAAAATGCAGAAGGCTGTTAAGGCAGTAAAGACTTCCACTGCCAAAGTCATTGTG
CTTTATACTTCTGACATTGACCTCAGCCTGTTTGTGCTGGAAATGATTCATCATAACATAACTGACAGGA
CATGGATAGCCACCGAAGCCTGGATTACCTCTGCTCTCATTGCAAAGCCTGAGTATTTCCCCTATTTTGG
TGGAACTATTGGATTTGCAACACCAAGAAGTGTTATACCAGGACTAAAAGAATTTCTTTATGATGTACAC
CCTAACAAGGATCCAAATGATGTCTTGACCATTGAATTCTGGCAAACTGCTTTTAACTGTACCTGGCCCA
ACAGCAGTGTTCCTTATAACGTGGATCACAGAGTGAATATGACTGGGAAAGAAGACAGACTGTATGACAT
GTCTGATCAGCTCTGCACTGGAGAGGAGAAGCTGGAAGATCTGAAAAACACCTATCTGGATACATCACAG
CTAAGAATTACAAACAATGTCAAACAAGCTGTATATGCTATAGCTCATGGCCTGGATCATCTCAGCAGAT
GTCAAGAAGGGCAGGGACCATTTGGTTCAAATCAGCAATGTGCATATATACCTACCTTTGATTTCTGGCA
GCTAATGTACTATATGAAAGAAATTAAATTTAAATCACATGAGGATAAATGGGTAATTCTGGATGATAAT
GGAGATTTGAAAAATGGACACTATGATGTCCTAAACTGGCACTTAGATGATGAGGGAGAAATTTCCTTTG
TGACAGTTGGGAGATTTAACTTTAGATCTACAAACTTTGAGCTTGTTATTCCAACGAATTCTACAATATT
TTGGAACACTGAGTCATCAAGGCGTCCAGATTCATTTTGCACACAAGTGTGTCCTCCAGGGACCCGGAAG
GGGATTCGTCAGGGGCAACCCATATGCTGCTTTGATTGCATCCCATGTGCTGATGGATATGTGTCAGAGA
AACCAGGACAGAGGGAATGTGATCCATGCGGTGAAGATGACTGGTCCAATGCAGAGAAGAGCAAGTGTGT
GCCAAAGCTTGTGGAATTCCTCGCTTATGAAGAGGCACTGGGGTTCACTCTTGTCATCCTGTCCATCTTT
GGGGCACTTGTCCTCTTGGCAGTAACTGTTGTGTATGTGATCCACAGACACACTCCATTGGTGAAAGCCA
ATGACCGGGAGCTGAGCTTCCTCATTCAGATGTCTCTGGTCATCACTGTGCTGTCTTCCTTGCTGTTCAT
AGGCAAGCCATGCAACTGGTCCTGCATGGCCCGCCAGATCACTCTGGCACTCGGCTTTTGCCTTTGTCTG
TCTTCCATTCTTGGAAAGACTATTTCACTCTTTTTTGCCTATAGGATTTCTGTATCTAAAACCCGTCTTA
TATCCATGCACCCCATTTTTCGAAAATTAATTGTACTGATCTGCGTTGTAGGGGAGATTGGTATATGTGC
AGCATACTTGGTGTTGGAGCCTCCAAGGATGTTCAAGAACATTGAAATTCAAAATGTAAAGATCATCTTT
GAATGCAATGAAGGTTCTATAGAGTTTCTGTGCTCCATATTTGGGTTTGATGTTCTCCTGGCTCTGCTGT
GTTTTCTTACAACCTTTGTGGCTCGCCAGCTGCCAGATAACTATTATGAAGGGAAATGTATCACTTTTGG
GATGCTGGTCTTTTTCATTGTCTGGATCTCTTTTGTCCCTGCTTACTTGAGCACCAAAGGCAAATTCAAA
GTGGCTGTGGAAATATTTGCCATTTTGGCATCTAGCTATGGCTTGTTAGGCTGTCTATTTCTTCCCAAGT
GCTTCATTATCTTGCTGAGGCCAAAGAGGAACACTGATGAAACTGTTGGTGGAAGAGTCCCCACTGTTGA
CAGGAGCATCCAGCTGACCTCAGCTTCTGTGAGCAGTGAGCTTAACAGCACCACAGTGTCCACTGTTCTA
GATGAGTAG

Translation (912 aa):
MASRQISLALGFLAFLWAVLGAQNKTEEVQCRLMAKFNLSGYVDAKNHSLVIAGLFPIHSRIIPVDEAIL
EPVSPMCEGFNFRGFRWMKTMIHTIKEINERKDILPNHTLGYQIFDSCYTISKAMESSLVFLTGQEEFKP
NFRNSTGSTLAALVGSGGSSLSVAASRILGLYYMPQVGYTSSCSILSDKFQFPSYLRVLPSDNLQSEAIV
NLIKHFGWVWVGAIAADDDYGKYGVKTFKEKMESANLCVAFSETIPKVYSNEKMQKAVKAVKTSTAKVIV
LYTSDIDLSLFVLEMIHHNITDRTWIATEAWITSALIAKPEYFPYFGGTIGFATPRSVIPGLKEFLYDVH
PNKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDQLCTGEEKLEDLKNTYLDTSQ
LRITNNVKQAVYAIAHGLDHLSRCQEGQGPFGSNQQCAYIPTFDFWQLMYYMKEIKFKSHEDKWVILDDN
GDLKNGHYDVLNWHLDDEGEISFVTVGRFNFRSTNFELVIPTNSTIFWNTESSRRPDSFCTQVCPPGTRK
GIRQGQPICCFDCIPCADGYVSEKPGQRECDPCGEDDWSNAEKSKCVPKLVEFLAYEEALGFTLVILSIF
GALVLLAVTVVYVIHRHTPLVKANDRELSFLIQMSLVITVLSSLLFIGKPCNWSCMARQITLALGFCLCL
SSILGKTISLFFAYRISVSKTRLISMHPIFRKLIVLICVVGEIGICAAYLVLEPPRMFKNIEIQNVKIIF
ECNEGSIEFLCSIFGFDVLLALLCFLTTFVARQLPDNYYEGKCITFGMLVFFIVWISFVPAYLSTKGKFK
VAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTTVSTVL
DE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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