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Report for CCDS26216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26216.1 Public Mus musculus 13 Net1 23 108 98 CCDS HistoryNCBI Gene:56349Re-query CCDS DB by CCDS ID:26216.1Re-query CCDS DB by GeneID:56349See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091853.11 ENSMUSP00000089464.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091853.11Link to Ensembl Protein Viewer:ENSMUSP00000089464.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091853Re-query CCDS DB by Protein ID:ENSMUSP00000089464
Original member Current member NCBI NM_019671.3 NP_062645.2 Accepted alive Link to Nucleotide Sequence:NM_019671.3Link to Protein Sequence:NP_062645.2Re-query CCDS DB by Nucleotide ID:NM_019671Re-query CCDS DB by Protein ID:NP_062645Link to BLAST:NP_062645.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062645.2 595 Q9Z206-1 595 100% 0 0

Chromosomal Locations for CCDS 26216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 3884070 3884473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3884803 3884989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3886048 3886218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3886538 3886795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3887371 3887447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3887571 3887667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3887978 3888040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3888355 3888522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3888871 3888978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3907797 3907856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3912868 3912934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3917938 3918065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGGAGCCAGAGCCGGCGGCTCAGAAGCAGCCCCGACCTCGGAGGAGAAGCCGCAGGGTCTCAATGCTCA
GCGAGGAACCTGCCGCGGGGCTTCCGGCCGACACACCCGGGCCGGCGGCGAACGAGAGATGCTCCCTTCG
GAGAGGCAGCTCCTTCACATTTTTAACCCCTGGCCCACACTGGGACTTCACTTTGAAAAGAAAACGAAGA
GAGAAAGATGATGATGCTGTAAGCCTTAGCAGCCTTGATTTGAAGGAGCCAAGCAATAAGAGAGTTCGGC
CTCTAGCTCGGGTCACATCTTTGGCAAACTTAATCTCTCCCGTAAGAAATGGAGCAGTCAGGCGCTTCGG
TCAGACCATACAGTCGTTTACCCTTCGTGGTGACCACAGATCCCCAGCCTCTGCCCAGAAGTCATTCAGC
AGGTCCACCGTCCCCACACCCACCAAGAGAAGAAGCAGTGCACTATGGTCGGAAATGCTAGACATCAATA
TGAAGGAGTCCTTGACCACTCGAGAGATCAAACGTCAGGAGGCCATATATGAATTGTCCCGAGGGGAACA
GGACTTGATTGAGGATCTCAAGCTCGCTAGAAAGGCCTACCATGACCCCATGTTAAAGCTGTCTATCATG
TCAGAAGAGGAACTCACGCACATATTTGGAGACTTGGATGCTTATATACCTCTGCACGAAGATCTGTTAG
CAAGAATTGGAGAAGCAACCAAGCCTGATGGGACTGTGGAGCAGATCGGTCACATTCTCGTGAACTGGTT
ACCAGGCCTGAATGCCTACAGAGGCTACTGCAGTAACCAGCTGGCGGCCAAGGCTCTTCTGGATCAGAAG
AAACAAGACCCAAGAGTCCAAGACTTCCTCCAGCGCTGTCTGGAGTCTCCTTTCAGTCGAAAACTAGATC
TTTGGAGTTTCCTAGATATCCCTCGAAGTCGCCTCGTCAAGTACCCCTTACTGTTAAAAGAAATCCTTAG
ACACACTCCCAAAGACCACCGTGATGTTCAGCTTCTAGAAGAGGCAATATTGATAATACAAGGAGTTCTT
TCTGATATCAACTTGAAGAAAGGCGAATCTGAGTGTCAGTATTACATCAACAAGCTGGAGTACCTGGACG
AGAAGCAGAAGGACCCTAGGATCGAAGCGAGCAAAGTGCTGCTGTGCCATGGGGAGCTGAAGAATAAAAG
CGGCCATAAACTGTACATTTTCCTATTTCAAGACATCTTGGTTTTGACTCGGCCTGTCACCCGAAATGAG
CGCCACTTGTACCAGGTTTACCGGCAGCCCATCCCAGTCCAGGAGCTGGTGCTGGAAGACCTGCAGGACG
GGGATGTGCGCATGGGTGGCTCCTTCCGAGGGGCCTTCGGCAACTCAGACAAAGCTAAAAATATCTTTAG
GGTCCGCTTCCAAGACCCTTCTCCAGGCCACTCCCACACACTGCAAGCCAATGATGTGTTCCATAAGCAG
CAGTGGTTCAACTGTATTCGCGCGGCCATTGCCCCCTTCCAGCGGGCCGCCAGCCCCTTAGAGCTTCAGG
GCTTGCCAGACCTCCACGAAGAGTGTGAAGAGAACAACCCTTCTGCTGGGAACCTCAGAGCCCAGCGACG
GTCATGCGTGGTTCCTGGTGTCATGCAGATAGACGAGGAAAGCGCCCTGGATTGTGGCTCCAGTGTACAG
ACAGTGGAAGACACCAGGAACATGAAGGCACAGCGGCCTCAGCCTGGCTTACGAAGAGCAAGGGACAAAG
CACAGTCAGGTGGCAAAAAGAAAGAGACTTTGGTGTAA

Translation (595 aa):
MEPEPAAQKQPRPRRRSRRVSMLSEEPAAGLPADTPGPAANERCSLRRGSSFTFLTPGPHWDFTLKRKRR
EKDDDAVSLSSLDLKEPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASAQKSFS
RSTVPTPTKRRSSALWSEMLDINMKESLTTREIKRQEAIYELSRGEQDLIEDLKLARKAYHDPMLKLSIM
SEEELTHIFGDLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPGLNAYRGYCSNQLAAKALLDQK
KQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTPKDHRDVQLLEEAILIIQGVL
SDINLKKGESECQYYINKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTRNE
RHLYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFGNSDKAKNIFRVRFQDPSPGHSHTLQANDVFHKQ
QWFNCIRAAIAPFQRAASPLELQGLPDLHEECEENNPSAGNLRAQRRSCVVPGVMQIDEESALDCGSSVQ
TVEDTRNMKAQRPQPGLRRARDKAQSGGKKKETLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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