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Report for CCDS24017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24017.1 Public Mus musculus 10 2310011J03Rik 23 108 98 CCDS HistoryNCBI Gene:66374Re-query CCDS DB by CCDS ID:24017.1Re-query CCDS DB by GeneID:66374See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24017.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020341.8 ENSMUSP00000020341.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020341.8Link to Ensembl Protein Viewer:ENSMUSP00000020341.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020341Re-query CCDS DB by Protein ID:ENSMUSP00000020341
Original member Current member NCBI NM_025521.3 NP_079797.1 Accepted alive Link to Nucleotide Sequence:NM_025521.3Link to Protein Sequence:NP_079797.1Re-query CCDS DB by Nucleotide ID:NM_025521Re-query CCDS DB by Protein ID:NP_079797Link to BLAST:NP_079797.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079797.1 109 Q9D7E4 109 100% 0 0

Chromosomal Locations for CCDS 24017.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80319348 80319547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80320183 80320312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGAACTCCAAGGCGAAGAAACGCGTGGTACTGCCCACTCGCCCCGCGCCTCCCACGGTGGAGCAGATCC
TGGAGGACGTGCGAGGGGCACCCGCTCAAGATCCTGTTTTCACTGCCCTGGCCCCGGAAGACCCCCCAGA
CCCATCCCCAAGGGCTGAGGACTCTGAGATCCAGCAGGAGCAGATCTACCAACAGAGCCGGGCCTACGTG
GCTATGAATGAGAGGCTGCGGCAGGCGGGGGAAGCTCTGAGACAGAAGTTCGATGGCCTTCGGCAAGCTG
GTCAGCGGCTGGAACAGGATATCAGCCAGGTGACTTCAGCCACCTCCTAG

Translation (109 aa):
MNSKAKKRVVLPTRPAPPTVEQILEDVRGAPAQDPVFTALAPEDPPDPSPRAEDSEIQQEQIYQQSRAYV
AMNERLRQAGEALRQKFDGLRQAGQRLEQDISQVTSATS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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