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Report for CCDS29877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29877.1 Public Mus musculus 19 Mfsd13a 23 108 98 CCDS HistoryNCBI Gene:75146Re-query CCDS DB by CCDS ID:29877.1Re-query CCDS DB by GeneID:75146See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086969.12 ENSMUSP00000084189.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086969.12Link to Ensembl Protein Viewer:ENSMUSP00000084189.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000086969Re-query CCDS DB by Protein ID:ENSMUSP00000084189
Original member Current member EBI ENSMUST00000128041.7 ENSMUSP00000119072.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128041.7Link to Ensembl Protein Viewer:ENSMUSP00000119072.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128041Re-query CCDS DB by Protein ID:ENSMUSP00000119072
Original member Current member NCBI NM_029186.2 NP_083462.2 Accepted alive Link to Nucleotide Sequence:NM_029186.2Link to Protein Sequence:NP_083462.2Re-query CCDS DB by Nucleotide ID:NM_029186Re-query CCDS DB by Protein ID:NP_083462Link to BLAST:NP_083462.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083462.2 519 Q6PDE8 519 100% 0 0

Chromosomal Locations for CCDS 29877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46366386 46366553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46367210 46367292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46367709 46368161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46368266 46368389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46369237 46369333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46371936 46372107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46372182 46372375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46374446 46374714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGGGCTGGACTGGCCCCAAGCCTGGCTATTGGGCCTGCCCATAGCTGTGGTGTACGGCTCGTTGGCCC
TCTTCACCTCCATCCTGCACAATGTGTTCCTGCTGTACTACGTGGACACCTTCGTCTCAGTGTATAAGAT
CAATAAAGTGTCCTTCTGGGTTGGAGAGACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTC
GGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCGGTCAGGAGCAGGGCTCTCCTCCAGAGACG
TGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTG
GGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTC
GTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACT
TTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGA
GGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACC
ACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATG
GTGGCGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCT
CCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAGGTGTTCCACTGT
CACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTG
GCTCCTTCCTGTTGGGCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCG
GCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTG
TTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAGCAACCGTGTCTTCACTGAGGGTA
CCTGTAAGCTGCTGACACTGGTGGTCACTGACCTGGTGGATGAGGACCTGGTACTGAACCATCGGAAGCA
GGCAGCCTCGGCGCTCCTCTTTGGCATGGTTGCCCTGGTGACCAAGCCTGGCCAGACCTTTGCCCCACTG
CTGGGCACCTGGCTTCTCTGCTTCTACACAGGTCACGACCTTTTTCAGCAATCCCCAATGACCCCTGTGG
GGAGCGTTCGGCCATGGCCAGAGCTGCCAGCCCCAGCCCCCGCCCCCGCGCAGGCTCCCACACTCCGCCA
GGGCTGCTTCTACCTGCTGGTGTTTGTCCCCATCACCTGTGCGCTGCTGCAGCTCTTCACCTGGTCCCAG
TTCACGCTGCATGGGAGACGCCTACGCACGGTCAAGGCCCAGCGTCAGAACCTGGCCCAGATCCATACTC
TGAACATTAAGATGGTGTGA

Translation (519 aa):
MGLDWPQAWLLGLPIAVVYGSLALFTSILHNVFLLYYVDTFVSVYKINKVSFWVGETVFLLWNSFNDPLF
GWLSDRQLLSSQPRSGAGLSSRDVVLTRVRALGWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTL
VDLHHHALLADLALSSHDRTHLNFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVVLAAGSGLGFLGT
TQLLKRQIEATRRDRGCPGLDLDGGVCEEEPPVGGEEAGNITLGQYLRQLARHQNFLWFVGMDLVQVFHC
HFNSNFFPLFLEHLLSDHISLSTGSFLLGISYVAPHLNNLYFLPLCRRWGVYAVVRGLFLLKLSLSLLML
LAGPDHPGLLCFFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPL
LGTWLLCFYTGHDLFQQSPMTPVGSVRPWPELPAPAPAPAQAPTLRQGCFYLLVFVPITCALLQLFTWSQ
FTLHGRRLRTVKAQRQNLAQIHTLNIKMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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