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Report for CCDS29171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29171.1 Public Mus musculus 18 Pcdhb3 23 108 98 CCDS HistoryNCBI Gene:93874Re-query CCDS DB by CCDS ID:29171.1Re-query CCDS DB by GeneID:93874See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051754.1 ENSMUSP00000059180.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051754.1Link to Ensembl Protein Viewer:ENSMUSP00000059180.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000051754Re-query CCDS DB by Protein ID:ENSMUSP00000059180
Original member Current member NCBI NM_053128.2 NP_444358.2 Accepted alive Link to Nucleotide Sequence:NM_053128.2Link to Protein Sequence:NP_444358.2Re-query CCDS DB by Nucleotide ID:NM_053128Re-query CCDS DB by Protein ID:NP_444358Link to BLAST:NP_444358.2

Chromosomal Locations for CCDS 29171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37300983 37303337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGGAGGCCAGAGAGGAAAGCTTTCTTAAACAAAGGCAAGTCTTGCTTCTCTTTGTTTTTCTGGGTGGGT
CTCTTGCTGGGTCCATGTCTAGGCGCTATTCTGTGGCGGAGGAAAAGGAGAAGGGCTTCGTAATAGCCAA
TTTAGCGACGGATCTGGGGCTTAGTATAGAAGAACTGGCTGAAAGGAGAGCTCAAGCTATCTCCAAAGGG
AACATACAGTATTTTCAGCTCAGTCATCAGACCGGAGATTTGCTCTTAGTTGAGAAATTGGACCGGGAGG
ATTTGTGTGGCTCGACAGAGCCTTGTGTGCTGCACTTTCAGATATTGCTGCATGATCCTTTGCAGTTTAT
TACAAATGAGCTCGAGGTCATAGATGTAAATGACCATGCCCCGGAGTTCTTTGAAAATGCAATGCAGCTG
AAAGTCCTGGAAAACTCCGTGCCTGGGACAGTAATTCCTTTGGGAAATGCCGTGGACCTGGATGTGGGAA
GAAACGGACTCCAGAACTACACGGTCTCTCCCACGTCTCATTTTCATGTTCACACCCGCCGTCGCAGGGA
TGGAAGAAAGTATCCAGAGCTAGTTCTAGACAGAGCTCTGGATCGGGAAGAGCAGTCAGAGATCAGTTTA
ACTCTCACAGCCCTGGATGGAGGATCCCCGCCTCGTTCTGGAACTACCCAGGTCCACATCCTGGTCTTAG
ACACAAATGATAATGCCCCAGAATTTACACAGTCACTCTATGAGGTTCAAATTTTAGAGAAAAGCCCTAT
TGGCTCTGTCATTACCACTGTCTCTGCCTCTGACTTGGATACGGGAAATTTTGGTGCAATATCATATGTC
TTTTTTCATGCTTCTGAAGAAATTCTCGAAACTTTTCGACTGAACTCCAGTACTGGTAATATACAGCTAC
TTAAGGGTTTGGATTATGAAGCAATTAATACTTATGAGGTTGACATAGAGGCCAAGGATGGTGGAGGCCT
TTCAGGGAAATGCACAGTCATAGTTCAGATACTTGATGTGAACGATAACCCACCAGAACTGACCCTGTCA
TCAGTTAACAGTCTTATCCCCGAGAATTCAGCAGAAACTGTGGTGGCTGTTTTCAGTGTTTCTGATTTAG
ACTCTGGAGATAACGGAAGAGTGACATGTTCCATCCAGAACGACCTCCCCTTCATCTTGAAACCATCTGT
AGAGAACTTCTATACTATAGCGTCCGAATGGGCTTTGGACAGAGAGATCAGAGCTGAGTACAACATCACC
ATCACGGTCTCAGACCTGGGCACACCCAGGCTCACAACCCAGCACACCATAACAGTGCAAGTGTCTGACC
TCAACGACAACGCCCCCGCCTTCACCCAAACTTCCTACACCATGTCGGTCCGTGAGAACAACAGCCCTGC
CCTGCACATAGGCACCATCAGTGCCACAGACTCAGACTCAGGCTCCAATGCCCACATCACCTACTCGCTG
CTGCCGCCCCACGACCCACAGCTGGCCCTCGATTCACTCATCTCCATCAATGCTGACAACGGGCAGCTGT
TTGCACTCAGGGCGCTGGACTATGAGGCCCTGCAGGCCTTCGAGTTCCATGTGGGCGCCACAGATGGAGG
CTCACCCGCGCTCAGCAGCCAGGCTCTGGTGCGCGTGGTGGTGCTGGACGACAATGACAATGCGCCCTTC
GTGCTCTACCCACTACAGAACGCTTCTGCGCCCTGCACTGAGCTGCTGCCCAGGGCTGCGGAGACTGGAT
ACCTGGTCACCAAGGTAGTGGCAGTGGACCGCGACTCTGGACAGAATGCCTGGCTGTCATTCCAGCTGCT
CAAGTCCACAGAGCCCGGGTTGTTCAGTGTGTGGGCTCACAATGGCGAGGTGCGCACCGCCAGGCTGCTG
AGTGAGCGCGATATGCTCAAGCAAAAGCTGCTGCTACTGGTCAAGGACAATGGGGATCCTCCTCGCTCTG
CAAGTGTCACCCTGAATGTGCTGCTAGTGGATGGCTTTTCTCAACCCTACCTGCCTTTGCCTGAGGTGGC
ACGCGACTCCGTCCAAAACGACGTGGACTTGCTCACGTTGTACTTAGTCATCGCCTTGGCATCTGTGTCT
TCTCTCTTCCTCTTGTCTGTGCTGCTGTTTGTGGGGGTGAGACTGTGCAGGAGGGCCAGAGCAGCTTCTA
TGGGTGGCTGCTCTGTGCCTGAGGGACACTTTCCTGGCCACCTGGTGGACGTCAGCGGTATGGGGACCCT
GTCACAGAGCTACCAGTATGAGGTGTGTCTGACAGGAGATGCTGGGACTGGTGAGTTCAAACTCCTGAAT
CCGGTGATACCAAACCTGTTTCTGGAAGAATCTGAAAGAAGTTAA

Translation (784 aa):
MEAREESFLKQRQVLLLFVFLGGSLAGSMSRRYSVAEEKEKGFVIANLATDLGLSIEELAERRAQAISKG
NIQYFQLSHQTGDLLLVEKLDREDLCGSTEPCVLHFQILLHDPLQFITNELEVIDVNDHAPEFFENAMQL
KVLENSVPGTVIPLGNAVDLDVGRNGLQNYTVSPTSHFHVHTRRRRDGRKYPELVLDRALDREEQSEISL
TLTALDGGSPPRSGTTQVHILVLDTNDNAPEFTQSLYEVQILEKSPIGSVITTVSASDLDTGNFGAISYV
FFHASEEILETFRLNSSTGNIQLLKGLDYEAINTYEVDIEAKDGGGLSGKCTVIVQILDVNDNPPELTLS
SVNSLIPENSAETVVAVFSVSDLDSGDNGRVTCSIQNDLPFILKPSVENFYTIASEWALDREIRAEYNIT
ITVSDLGTPRLTTQHTITVQVSDLNDNAPAFTQTSYTMSVRENNSPALHIGTISATDSDSGSNAHITYSL
LPPHDPQLALDSLISINADNGQLFALRALDYEALQAFEFHVGATDGGSPALSSQALVRVVVLDDNDNAPF
VLYPLQNASAPCTELLPRAAETGYLVTKVVAVDRDSGQNAWLSFQLLKSTEPGLFSVWAHNGEVRTARLL
SERDMLKQKLLLLVKDNGDPPRSASVTLNVLLVDGFSQPYLPLPEVARDSVQNDVDLLTLYLVIALASVS
SLFLLSVLLFVGVRLCRRARAASMGGCSVPEGHFPGHLVDVSGMGTLSQSYQYEVCLTGDAGTGEFKLLN
PVIPNLFLEESERS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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