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Report for CCDS29096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29096.1 Public Mus musculus 18 Zfp397 23 108 98 CCDS HistoryNCBI Gene:69256Re-query CCDS DB by CCDS ID:29096.1Re-query CCDS DB by GeneID:69256See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29096.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060762.5 ENSMUSP00000057253.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060762.5Link to Ensembl Protein Viewer:ENSMUSP00000057253.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060762Re-query CCDS DB by Protein ID:ENSMUSP00000057253
Original member Current member NCBI NM_027007.2 NP_081283.2 Accepted alive Link to Nucleotide Sequence:NM_027007.2Link to Protein Sequence:NP_081283.2Re-query CCDS DB by Nucleotide ID:NM_027007Re-query CCDS DB by Protein ID:NP_081283Link to BLAST:NP_081283.2

Chromosomal Locations for CCDS 29096.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 23956440 23956853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23957055 23957196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23960016 23961043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGCTGTGGAATCCAGAGCAATTTCAACTTTAAAACCTCAGGACCATCAAGAAGAATTAATACTAGTGA
AAATAGAAGATAGTAGCTTTTCTTGGAGTCAGAAATGTAAACAGAATGGGAGTGCCCAATCTTGCCAAGA
ATTATTTCGCCAGCAATTCAGGAAGTTTTGCTATCATGAAACACCTGGGCCCCGAGAGGCTCTGGGGCGA
CTCCAGGAACTTTGCCATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCCTAGAACTGTTAG
TGCTGGAGCAGTTCCTGAGCATCCTACCTGAAGAGCTGAAGATATGGGTTCAACAACATGGTCCAAAAAG
TGGTGAGGAAGCTGTGACTCTACTGGAGGATTTGGAGAAAGAGTTTGATGATCCGGGGCAGCAGGTCCCA
GATAATCTACAAGGACCGTCAGTGTCATGGAAAGATTTGACATATCTCAAAACATCCCAAGATTCAACCA
GCATCCAAGTCCGGCCTTTGAAGACACAGCTGAAATCCTGGAATCCTTGCCTTTCCTCTAAAAGTGATGC
TAAGAATAATGAATCAACAGCAAAAGAGGACATTTCAGAAGAAAAAGCACCAGAACTCTCTTGGGATCCT
TCATGTAGAGGTGTCAGTGAGCACAAAAGCAATTTAGAATGGCAGCAAAGAAGTTCCCCTGTCCACAGGG
GCAGTTTTAGTCAAGTGATCTTCACACACAAATCCTTAGCAAAGAGAGACCATCTTGATGAATCTCAAAG
ATGCTTGATTATAAGTACAAACTCTGTAACATGTCAGAAAGTCTCTACAGATGACAGACCTTACAGATGT
GATGTATGTGGGCATAGCTTTAAACAACATTTCTCTCTAACACAACATCAGAGAATACATACTGGAGAAA
AGCCCTATAAATGTAATCAGTGTGGGAAGGCCTTTAGTTTGAGGTCATATCTTATTATTCATCAGAAAAT
CCATAGTGGTGAAAAAGCATATGAATGCAATGAATGTGGAAAGGCCTTCAATCAGAGCTCAGCTCTCACT
AGACATCGGAAAATTCATACAGGTGAGAAAGCTTGTAAATGTAATGAGTGTGGAAAAGCATTCAGTCAAA
GTTCTTACTTAATTATACATCAAAGAATTCACACTGGTGAGAAACCCTATGGGTGTAGTGAATGTGGGAA
AACCTTTAGCCAGAGCTCAAAGCTTATTAGACATCAGCGAATTCATACAGGAGAGAGACCATATGAATGT
AATGAGTGTGGAAAAGCTTTCAAGCAGAGCTCAGAGCTGATTACCCATCAGAGGATACACAGTGGAGAGA
AACCTTATGAATGTAATGAGTGTGGAAAAGCCTTCAGTCTGAATTCAAACCTCATAAGACATCAAAGAAT
CCACAGTGGAGAGGAGCCTTATCAGTGTAATGACTGTGGCAAAACCTTCAAAAGGAGCTCAGCCCTTGTT
CAGCACCAGAGAATCCACTCTGGGGATGAAGCGTATATATGTAATGAATGTGGGAAGGCTTTTAGGCACA
GGTCAGTGTTAATGCGCCATCAGAGAGTCCACACTATTAAGTAA

Translation (527 aa):
MAVESRAISTLKPQDHQEELILVKIEDSSFSWSQKCKQNGSAQSCQELFRQQFRKFCYHETPGPREALGR
LQELCHQWLMPELHTKEQILELLVLEQFLSILPEELKIWVQQHGPKSGEEAVTLLEDLEKEFDDPGQQVP
DNLQGPSVSWKDLTYLKTSQDSTSIQVRPLKTQLKSWNPCLSSKSDAKNNESTAKEDISEEKAPELSWDP
SCRGVSEHKSNLEWQQRSSPVHRGSFSQVIFTHKSLAKRDHLDESQRCLIISTNSVTCQKVSTDDRPYRC
DVCGHSFKQHFSLTQHQRIHTGEKPYKCNQCGKAFSLRSYLIIHQKIHSGEKAYECNECGKAFNQSSALT
RHRKIHTGEKACKCNECGKAFSQSSYLIIHQRIHTGEKPYGCSECGKTFSQSSKLIRHQRIHTGERPYEC
NECGKAFKQSSELITHQRIHSGEKPYECNECGKAFSLNSNLIRHQRIHSGEEPYQCNDCGKTFKRSSALV
QHQRIHSGDEAYICNECGKAFRHRSVLMRHQRVHTIK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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