NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16813.1 Public Mus musculus 2 Banf2 23 108 98 CCDS HistoryNCBI Gene:403171Re-query CCDS DB by CCDS ID:16813.1Re-query CCDS DB by GeneID:403171See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16813.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037722.8 ENSMUSP00000046219.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037722.8Link to Ensembl Protein Viewer:ENSMUSP00000046219.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000037722Re-query CCDS DB by Protein ID:ENSMUSP00000046219
Original member Current member EBI ENSMUST00000110032.1 ENSMUSP00000105659.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110032.1Link to Ensembl Protein Viewer:ENSMUSP00000105659.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110032Re-query CCDS DB by Protein ID:ENSMUSP00000105659
Original member Current member NCBI NM_001044750.1 NP_001038215.1 Accepted alive Link to Nucleotide Sequence:NM_001044750.1Link to Protein Sequence:NP_001038215.1Re-query CCDS DB by Nucleotide ID:NM_001044750Re-query CCDS DB by Protein ID:NP_001038215Link to BLAST:NP_001038215.1
Original member Current member NCBI NM_207275.2 NP_997158.1 Accepted alive Link to Nucleotide Sequence:NM_207275.2Link to Protein Sequence:NP_997158.1Re-query CCDS DB by Nucleotide ID:NM_207275Re-query CCDS DB by Protein ID:NP_997158Link to BLAST:NP_997158.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038215.1 90 Q8BVR0 90 100% 0 0
NP_997158.1 90 Q8BVR0 90 100% 0 0

Chromosomal Locations for CCDS 16813.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 144065408 144065533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144073767 144073913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (273 nt):
ATGGACGACATGTCGCCCAGGCTGAGAGCCTTTCTCTCTGAACCCATTGGGGAAAAGGATGTGGCCTGGG
TGGATGGCATCAGCCGTGAACTTGCCATCAATTTGGTCACCAAAGGTTTCAACAAGGCCTATGTCCTGCT
GGGACAGTTTCTTCTGATGCACAAGAATGAAGCAGAGTTCCAGAGGTGGATCATCTGCTGCTGTGGAGCT
ACGGAGTGTGAGGCCCGCCAGAGCTCCACCTGCCTGAAGGAGTGGTGCTCCTGTTTCCTATAG

Translation (90 aa):
MDDMSPRLRAFLSEPIGEKDVAWVDGISRELAINLVTKGFNKAYVLLGQFLLMHKNEAEFQRWIICCCGA
TECEARQSSTCLKEWCSCFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH