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Report for CCDS38943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38943.1 Public Mus musculus 4 Pdpn 23 108 98 CCDS HistoryNCBI Gene:14726Re-query CCDS DB by CCDS ID:38943.1Re-query CCDS DB by GeneID:14726See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030317.13 ENSMUSP00000030317.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030317.13Link to Ensembl Protein Viewer:ENSMUSP00000030317.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030317Re-query CCDS DB by Protein ID:ENSMUSP00000030317
Original member NCBI NM_010329.3 NP_034459.2 Updated not alive Link to Nucleotide Sequence:NM_010329.3Link to Protein Sequence:NP_034459.2Re-query CCDS DB by Nucleotide ID:NM_010329Re-query CCDS DB by Protein ID:NP_034459
Current member NCBI NM_010329.4 NP_034459.2 Accepted alive Link to Nucleotide Sequence:NM_010329.4Link to Protein Sequence:NP_034459.2Re-query CCDS DB by Nucleotide ID:NM_010329Re-query CCDS DB by Protein ID:NP_034459Link to BLAST:NP_034459.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034459.2 172 Q62011 172 100% 0 0

Chromosomal Locations for CCDS 38943.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143268420 143268426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143269188 143269299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143270523 143270561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143273900 143274056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143276071 143276207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143299189 143299255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGTGGACCGTGCCAGTGTTGTTCTGGGTTTTGGGGAGCGTTTGGTTCTGGGACTCTGCGCAGGGAGGGA
CTATAGGCGTGAATGAAGATGATATTGTGACCCCAGGTACAGGAGACGGCATGGTGCCCCCAGGTATAGA
AGACAAAATAACAACCACAGGTGCTACTGGAGGGCTTAATGAATCTACTGGCAAGGCACCTCTGGTACCA
ACGCAGAGAGAGCGTGGGACGAAGCCTCCCTTAGAGGAACTGTCCACCTCAGCAACCTCAGACCATGATC
ACAGAGAACACGAGAGTACAACCACTGTCAAAGTGGTGACTAGCCACTCTGTGGACAAGAAAACAAGTCA
CCCCAATAGAGATAATGCAGGGGATGAAACGCAGACAACAGATAAGAAAGATGGCTTGCCAGTAGTCACC
CTGGTTGGAATCATAGTTGGCGTCTTGTTAGCCATTGGCTTCGTCGGAGGGATCTTCATTGTTGTTATGA
AGAAGATTTCTGGAAGGTTCTCGCCCTAA

Translation (172 aa):
MWTVPVLFWVLGSVWFWDSAQGGTIGVNEDDIVTPGTGDGMVPPGIEDKITTTGATGGLNESTGKAPLVP
TQRERGTKPPLEELSTSATSDHDHREHESTTTVKVVTSHSVDKKTSHPNRDNAGDETQTTDKKDGLPVVT
LVGIIVGVLLAIGFVGGIFIVVMKKISGRFSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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