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Report for CCDS14964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14964.1 Public Mus musculus 1 Hsfy2 23 108 98 CCDS HistoryNCBI Gene:71066Re-query CCDS DB by CCDS ID:14964.1Re-query CCDS DB by GeneID:71066See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062085.5 ENSMUSP00000049715.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062085.5Link to Ensembl Protein Viewer:ENSMUSP00000049715.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062085Re-query CCDS DB by Protein ID:ENSMUSP00000049715
Original member Current member NCBI NM_027661.2 NP_081937.1 Accepted alive Link to Nucleotide Sequence:NM_027661.2Link to Protein Sequence:NP_081937.1Re-query CCDS DB by Nucleotide ID:NM_027661Re-query CCDS DB by Protein ID:NP_081937Link to BLAST:NP_081937.1

Chromosomal Locations for CCDS 14964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 56636198 56637376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGCTGAAGCACCTTCGGAAATGCAGGCTGTTTCCCCTAACAGTCTATCAACAGATTTAGAGACCTCTT
CCGGCGAGCCTTGGTGTGACAACACAGGTCAGAAGGACTCAGACTTATGGGCTATTATTGAGGAAAGTGC
ATTTCAGGTTTTGGCTCAGCGATTCTTGATAAAGAGGCCACCGCATACCCTCTGTGCCTCAGAGCCAGAT
GAAGACAGTAACTTATTTTCAATGACCTTCCCCAGAAAACTCTGGAAAATAGTGGGAAGTGACAAATTTA
AGTCTATTTGGTGGGATGAGGACGGGACTTACATAGTGATCAATGAAGAGCTCTTCAAGAAGGAAGTGTT
GGAAAGAAAGGCCCCCTTCAGAATATTTGAAACTGATAGCATGAAAAGTTTGGTTCGACAACTTAATCTG
TATGGATTCAGGAAAATGAGACAGAACTTCCAAAGATCTGCTTCTCTCCCCGACTTTCTGGCTGAAGAAA
AAGGAATTTCTGCCTCATGTAAGTTACAATTCTACCAGAATCCAAACTTTCTGAGAGACTGTCCCCATCT
TATAGAAAGAATGAAAAGGAGAATTGGGATTAAAACAGTTTCTCGTGGAGCTGCTCCTTCCCTTCCTGAT
TTCAAGAACAAACACTTCAGACCAGACTTGGTCAAGATGGATGACCATAGTTTGGGTGTAGCTGTCCAAA
CCAGTGAGAGAAACTTGTTGTCCAGCTCTAGTATTTCAAATGTATATCTGAGACAGAAGCCTTCTCTTGC
TCAAGGGGGTTCTGATACGATGGATGTCATCAGAAGCGACTTTTCTCTTGCAACGCCAAGTTCCTTCAGA
CCACCTGAAGAAATTCTAACACATCGGCCTGCTCCATTAAATGAGGTGTCCTCTCTTTGTATGGACTCAC
AGAGAATCTTCACTCAAGCAAACGACAGCACTGTGAATTTCATTATAACCTCTATTACTCAAAACCGCGG
GGACATGTCTCACTTGTGGAATAGTTGTATTGAAATGCAAGGAGAGCCTTCCTTTCAGCCTGGGTTTCCT
CACTTTTCATCCAGTTCATCTACTTATTCTGACTCAAAAGCAAAGGGCGAACCTGAGTTACCGATACACA
AGGAAAGAGTAGCATCTACCACGTTGGCATCAACATCAAACCATCACTCATCTTCTTGA

Translation (392 aa):
MAEAPSEMQAVSPNSLSTDLETSSGEPWCDNTGQKDSDLWAIIEESAFQVLAQRFLIKRPPHTLCASEPD
EDSNLFSMTFPRKLWKIVGSDKFKSIWWDEDGTYIVINEELFKKEVLERKAPFRIFETDSMKSLVRQLNL
YGFRKMRQNFQRSASLPDFLAEEKGISASCKLQFYQNPNFLRDCPHLIERMKRRIGIKTVSRGAAPSLPD
FKNKHFRPDLVKMDDHSLGVAVQTSERNLLSSSSISNVYLRQKPSLAQGGSDTMDVIRSDFSLATPSSFR
PPEEILTHRPAPLNEVSSLCMDSQRIFTQANDSTVNFIITSITQNRGDMSHLWNSCIEMQGEPSFQPGFP
HFSSSSSTYSDSKAKGEPELPIHKERVASTTLASTSNHHSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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