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Report for CCDS4291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4291.1 Public Homo sapiens 5 HTR4 24 110 108 CCDS HistoryNCBI Gene:3360Re-query CCDS DB by CCDS ID:4291.1Re-query CCDS DB by GeneID:3360See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4291.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377888.8 ENSP00000367120.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377888.8Link to Ensembl Protein Viewer:ENSP00000367120.4Re-query CCDS DB by Nucleotide ID:ENST00000377888Re-query CCDS DB by Protein ID:ENSP00000367120
Original member Current member EBI ENST00000631296.1 ENSP00000485747.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000631296.1Link to Ensembl Protein Viewer:ENSP00000485747.1Re-query CCDS DB by Nucleotide ID:ENST00000631296Re-query CCDS DB by Protein ID:ENSP00000485747
Original member Current member NCBI NM_000870.7 NP_000861.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000870.7Link to Protein Sequence:NP_000861.1Re-query CCDS DB by Nucleotide ID:NM_000870Re-query CCDS DB by Protein ID:NP_000861Link to BLAST:NP_000861.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000861.1 388 Q13639-1 388 100% 0 0

Chromosomal Locations for CCDS 4291.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 148483203 148483293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148509456 148510024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148523193 148523346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148548668 148548868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148550137 148550262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148636989 148637014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGACAAACTTGATGCTAATGTGAGTTCTGAGGAGGGTTTCGGGTCAGTGGAGAAGGTGGTGCTGCTCA
CG
TTTCTCTCGACGGTTATCCTGATGGCCATCTTGGGGAACCTGCTGGTGATGGTGGCTGTGTGCTGGGA
C
AGGCAGCTCAGGAAAATAAAAACAAATTATTTCATTGTATCTCTTGCTTTTGCGGATCTGCTGGTTTCG
GTG
CTGGTGATGCCCTTTGGTGCCATTGAGCTGGTTCAAGACATCTGGATTTATGGGGAGGTGTTTTGTC
TT
GTTCGGACATCTCTGGACGTCCTGCTCACAACGGCATCGATTTTTCACCTGTGCTGCATTTCTCTGGA
T
AGGTATTACGCCATCTGCTGCCAGCCTTTGGTCTATAGGAACAAGATGACCCCTCTGCGCATCGCATTA
ATG
CTGGGAGGCTGCTGGGTCATCCCCACGTTTATTTCTTTTCTCCCTATAATGCAAGGCTGGAATAACA
TT
GGCATAATTGATTTGATAGAAAAGAGGAAGTTCAACCAGAACTCTAACTCTACGTACTGTGTCTTCAT
G
GTCAACAAGCCCTACGCCATCACCTGCTCTGTGGTGGCCTTCTACATCCCATTTCTCCTCATGGTGCTG
GCC
TATTACCGCATCTATGTCACAGCTAAGGAGCATGCCCATCAGATCCAGATGTTACAACGGGCAGGAG
CC
TCCTCCGAGAGCAGGCCTCAGTCGGCAGACCAGCATAGCACTCATCGCATGAGGACAGAGACCAAAGC
A
GCCAAGACCCTGTGCATCATCATGGGTTGCTTCTGCCTCTGCTGGGCACCATTCTTTGTCACCAATATT
GTG
GATCCTTTCATAGACTACACTGTCCCTGGGCAGGTGTGGACTGCTTTCCTCTGGCTCGGCTATATCA
AT
TCCGGGTTGAACCCTTTTCTCTACGCCTTCTTGAATAAGTCTTTTAGACGTGCCTTCCTCATCATCCT
C
TGCTGTGATGATGAGCGCTACCGAAGACCTTCCATTCTGGGCCAGACTGTCCCTTGTTCAACCACAACC
ATT
AATGGATCCACACATGTACTAAGGGATGCAGTGGAGTGTGGTGGCCAGTGGGAGAGTCAGTGTCACC
CG
CCAGCAACTTCTCCTTTGGTGGCTGCTCAGCCCAGTGACACTTAG


Translation (388 aa):
MDKLDANVSSEEGFGSVEKVVLLTFLSTVILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVS
V
LVMPFGAIELVQDIWIYGEVFCLVRTSLDVLLTTASIFHLCCISLD
RYYAICCQPLVYRNKMTPLRIAL
M
LGGCWVIPTFISFLPIMQGWNNIGIIDL
IEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLMVL
A
YYRIYVTAKEHAHQIQMLQRAGASSESRPQSADQHSTHRMRTETKAAKTLCIIMGCFCLCWAPFFVTNI
V
DPFIDYTVPGQVWTAFLWLGYINSGLNPFLYAFLNKSFRRAFLIILCCDDERYRRPSILGQTVPCSTTT
I
NGSTHVL
RDAVECGGQWESQCHPPATSPLVAAQPSDT



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 Genome Browser Links:   Ensembl Genome Browser
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