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Report for CCDS30276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30276.1 Public Mus musculus X Zfx 23 108 98 CCDS HistoryNCBI Gene:22764Re-query CCDS DB by CCDS ID:30276.1Re-query CCDS DB by GeneID:22764See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088102.11 ENSMUSP00000085423.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088102.11Link to Ensembl Protein Viewer:ENSMUSP00000085423.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088102Re-query CCDS DB by Protein ID:ENSMUSP00000085423
Original member Current member EBI ENSMUST00000113926.7 ENSMUSP00000109559.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113926.7Link to Ensembl Protein Viewer:ENSMUSP00000109559.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113926Re-query CCDS DB by Protein ID:ENSMUSP00000109559
Original member Current member EBI ENSMUST00000113927.7 ENSMUSP00000109560.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113927.7Link to Ensembl Protein Viewer:ENSMUSP00000109560.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113927Re-query CCDS DB by Protein ID:ENSMUSP00000109560
Original member Current member NCBI NM_001044386.1 NP_001037851.1 Accepted alive Link to Nucleotide Sequence:NM_001044386.1Link to Protein Sequence:NP_001037851.1Re-query CCDS DB by Nucleotide ID:NM_001044386Re-query CCDS DB by Protein ID:NP_001037851Link to BLAST:NP_001037851.1
Original member NCBI NM_001358356.1 NP_001345285.1 Updated not alive Link to Nucleotide Sequence:NM_001358356.1Link to Protein Sequence:NP_001345285.1Re-query CCDS DB by Nucleotide ID:NM_001358356Re-query CCDS DB by Protein ID:NP_001345285
Current member NCBI NM_001358356.2 NP_001345285.1 Accepted alive Link to Nucleotide Sequence:NM_001358356.2Link to Protein Sequence:NP_001345285.1Re-query CCDS DB by Nucleotide ID:NM_001358356Re-query CCDS DB by Protein ID:NP_001345285Link to BLAST:NP_001345285.1
Original member Current member NCBI NM_011768.2 NP_035898.2 Accepted alive Link to Nucleotide Sequence:NM_011768.2Link to Protein Sequence:NP_035898.2Re-query CCDS DB by Nucleotide ID:NM_011768Re-query CCDS DB by Protein ID:NP_035898Link to BLAST:NP_035898.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001037851.1 799 P17012 799 100% 0 0
NP_001345285.1 799 P17012 799 100% 0 0
NP_035898.2 799 P17012 799 100% 0 0

Chromosomal Locations for CCDS 30276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 94078796 94079979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94080720 94080860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94081337 94081486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94081825 94081968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94082150 94082299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94098283 94098852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94102291 94102351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGGATGAAGATGGACTTGAATTACAACAACAAGCACCAAACTCATTTTTTGATGCAACAGGAGCTGGTG
CTACACACATGGATGGTAATCAAATTGTTGTGGAAGTTCAAGAAACGGTTTATGTGTCAGATGTTGTGGA
TTCCGACATAACCGTACATAACTATGTTCCCGATGACCCAGATTCAGTTGTCATCCAGGATGTCATTGAG
GATGTTGTTATAGAAGATGTCCAGTGTACAGACATCATGGACGAAGCAGATGTATCGGAAACAGTCATCA
TCCCTGAACAAGTGCTGGATTCAGATGTAACCGAAGAAGTTTCTTTAACACATTGCACAGTTCCAGATGA
TGTTTTAGCTTCTGATATCACTTCAGCCTCAATATCTATGCCGGAACATGTCTTGACAAGTGAATCTATA
CATGTGTCTGACGTTGGTCACGTTGAACATGTGGTTCATGATAGTGTAGTAGAAGCAGAAATCGTCACAG
ATCCTCTGGCCGCTGATGTTGTCTCAGAAGAAGTGTTGGTAGCAGACTGTGCCTCTGAAGCAGTCATAGA
TGCCAACGGGATCCCTGTGAACCAGCAGGATGAAGAGAAAAACAACTGTGAGGACTACCTTATGATCTCT
TTGGATGATGCTGGTAAAATAGAACATGATGGTTCATCTGGACTGACTATGGACAACGAAACAGAAATTG
ACCCTTGTAAAGTGGATGGCACTTGCCCTGAAGTCATCAAGGTGTACATTTTTAAAGCTGATCCTGGAGA
AGATGACTTAGGTGGAACTGTAGATATCGTCGAAAGTGAGCCTGAGAATGAGCATGGAGTTGAACTACTC
GATCCAAACAATAGTATTCGCGTTCCCAGGGAAAAGATGGTTTATATGGCTGTTAACGACTCTCAGCAAG
AAGAAGAAGAACTGAATGTCGCTGAGATTGCTGATGAAGTTTATATGGAAGTGATTGTTGGAGAGGAGGA
TGCTGCAGCTGCAGCCGCAGCCGCAGTGCATGAACAGCAAGTGGAGGACAACGAAATGAAAACCTTCATG
CCGATTGCATGGGCAGCTGCTTACGGTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTG
CCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAAAAACCAAAGAAAAGGAGAAG
ACCTGATTCCAGGCAGTACCAAACAGCAATAATTATTGGCCCAGATGGACATCCTCTGACTGTCTACCCT
TGCATGATTTGTGGCAAGAAGTTTAAATCGAGAGGTTTCTTGAAAAGACACATGAAAAACCATCCTGAAC
ACCTTGCCAAGAAAAAGTACCGCTGTACTGACTGTGATTACACTACCAACAAGAAGATAAGTTTACACAA
TCACCTGGAGAGCCACAAGCTAACCAGCAAGGCAGAGAAAGCCATAGAATGCGATGAGTGCGGAAAGCAT
TTCTCTCATGCTGGCGCTTTGTTTACCCATAAAATGGTGCATAAGGAAAAAGGAGCCAACAAAATGCACA
AGTGTAAGTTCTGTGAATATGAAACAGCTGAACAAGGCCTATTGAATCGCCATCTTTTGGCAGTCCACAG
CAAGAATTTTCCTCACATTTGTGTAGAGTGTGGCAAAGGTTTCCGCCATCCGTCAGAGCTCAAAAAGCAC
ATGCGAATCCATACTGGAGAAAAGCCCTATGAATGCCAGTACTGCGAATACAGGTCTGCAGATTCTTCTA
ACTTGAAAACCCATGTAAAAACTAAGCATAGTAAAGAGATGCCATTCAAGTGTGACATTTGTCTTCTGAC
TTTCTCAGATACCAAAGAGGTGCAACAACATGCTCTTGTCCACCAAGAGAGCAAAACTCACCAGTGTTTG
CATTGTGATCACAAGAGTTCAAACTCAAGTGATTTGAAACGACACATAATTTCAGTTCATACGAAGGACT
ATCCTCATAAGTGTGACATGTGCGATAAAGGCTTTCATAGGCCTTCAGAACTCAAGAAACATGTGGCTGC
CCACAAGGGTAAAAAAATGCACCAGTGTAGACATTGTGACTTTAAGATTGCAGATCCGTTTGTACTAAGT
CGCCATATTCTCTCGGTTCATACAAAGGACCTTCCATTTAGGTGTAAGAGATGTAGAAAAGGATTTCGGC
AACAAAGTGAGCTTAAAAAGCATATGAAGACCCACAGTGGCCGGAAAGTGTATCAGTGTGAGTACTGTGA
ATATAGCACTACAGATGCCTCAGGCTTTAAGCGGCACGTTATCTCCATTCATACGAAAGACTATCCTCAC
CGCTGTGAGTACTGCAAGAAAGGATTCCGAAGACCCTCGGAAAAGAACCAGCACATAATGCGACATCATA
AAGAAGTTGGCCTGCCCTAA

Translation (799 aa):
MDEDGLELQQQAPNSFFDATGAGATHMDGNQIVVEVQETVYVSDVVDSDITVHNYVPDDPDSVVIQDVIE
DVVIEDVQCTDIMDEADVSETVIIPEQVLDSDVTEEVSLTHCTVPDDVLASDITSASISMPEHVLTSESI
HVSDVGHVEHVVHDSVVEAEIVTDPLAADVVSEEVLVADCASEAVIDANGIPVNQQDEEKNNCEDYLMIS
LDDAGKIEHDGSSGLTMDNETEIDPCKVDGTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENEHGVELL
DPNNSIRVPREKMVYMAVNDSQQEEEELNVAEIADEVYMEVIVGEEDAAAAAAAAVHEQQVEDNEMKTFM
PIAWAAAYGNNSDGIENRNGTASALLHIDESAGLGRLAKQKPKKRRRPDSRQYQTAIIIGPDGHPLTVYP
CMICGKKFKSRGFLKRHMKNHPEHLAKKKYRCTDCDYTTNKKISLHNHLESHKLTSKAEKAIECDECGKH
FSHAGALFTHKMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRHPSELKKH
MRIHTGEKPYECQYCEYRSADSSNLKTHVKTKHSKEMPFKCDICLLTFSDTKEVQQHALVHQESKTHQCL
HCDHKSSNSSDLKRHIISVHTKDYPHKCDMCDKGFHRPSELKKHVAAHKGKKMHQCRHCDFKIADPFVLS
RHILSVHTKDLPFRCKRCRKGFRQQSELKKHMKTHSGRKVYQCEYCEYSTTDASGFKRHVISIHTKDYPH
RCEYCKKGFRRPSEKNQHIMRHHKEVGLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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