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Report for CCDS26733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26733.1 Public Mus musculus 13 Rad17 23 108 98 CCDS HistoryNCBI Gene:19356Re-query CCDS DB by CCDS ID:26733.1Re-query CCDS DB by GeneID:19356See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022136.13 ENSMUSP00000022136.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022136.13Link to Ensembl Protein Viewer:ENSMUSP00000022136.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022136Re-query CCDS DB by Protein ID:ENSMUSP00000022136
Original member Current member EBI ENSMUST00000177848.2 ENSMUSP00000136292.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177848.2Link to Ensembl Protein Viewer:ENSMUSP00000136292.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177848Re-query CCDS DB by Protein ID:ENSMUSP00000136292
Original member Current member NCBI NM_001044371.2 NP_001037836.1 Accepted alive Link to Nucleotide Sequence:NM_001044371.2Link to Protein Sequence:NP_001037836.1Re-query CCDS DB by Nucleotide ID:NM_001044371Re-query CCDS DB by Protein ID:NP_001037836Link to BLAST:NP_001037836.1
Original member Current member NCBI NM_011233.3 NP_035363.2 Accepted alive Link to Nucleotide Sequence:NM_011233.3Link to Protein Sequence:NP_035363.2Re-query CCDS DB by Nucleotide ID:NM_011233Re-query CCDS DB by Protein ID:NP_035363Link to BLAST:NP_035363.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001037836.1 688 Q6NXW6 688 100% 0 0
NP_035363.2 688 Q6NXW6 688 100% 0 0

Chromosomal Locations for CCDS 26733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100617644 100617932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100619094 100619151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100622798 100622918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100624420 100624566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100627510 100627656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100627760 100627845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100629400 100629582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100631056 100631167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100632882 100632951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100633196 100633321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100633451 100633503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100633863 100633999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100636942 100637098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100643520 100643603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100644991 100645245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100649678 100649719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGTCAGAAACTTTCCTTAGACCAAAGGTGTCTTCCACAAAGGTGACAGACTGGGTAGCTCCAGCCTTTG
ATGACTTTGAGGCCAACACCGCCATCACCACCATCACTGCGTCATCTTTAACTTTCAGTAACTCCAGTCA
CAGAAGAAAATATTTGCCCTCCACATTAGAAAGTAACAGATTGTCGGCTAGAAAAAGAGGAAGGCTCTCT
TTAGAACAGACTCATGGTCTAGAAACTTCAAGAGAGCGTCTGTCCGACAATGAGCCGTGGGTGGATAAAT
ATAAACCAGAAACTCAGCATGAACTTGCTGTTCATAAAAAGAAAATTGAAGAGGTCGAAACCTGGTTAAA
AGCTCAAGTCTTAGAAGTGAAGCCAAAACAGGGTGGGTCTGTTTTATTAATAACAGGTCCTCCAGGATGT
GGAAAGACAACTACTATAAAAATACTGTCAAAGGAACTTGGGATCCAAGTACAAGAATGGGTTAATCCTA
TTTTACCAGACTTCCAAAAAGATGATTACAAGGAGTTACTTAGTTTAGAATCAAACTTCTCTGTAGTTCC
ATACCAATCTCAGATAGCAGTCTTCAATGACTTTCTATTAAGAGCCACCAAGTACAGCAAACTGCAGATG
CTTGGAGACGATCTGACAACTGATAAGAAGATCATTCTGGTGGAAGAGTTACCTAACCAGTTTTATCGAG
ACCCTAACGCTTTACATGAGATTCTAAGAAAGCATGTGCAGATTGGCCGGTGTCCTCTTGTATTTATAGT
CTCTGACAGTGTCAGTGGAGACAATAATCAGCGGCTACTCTTCCCCAGAAACATTCAAGAAGAGTGTTCT
GTTTCAAACATTAGTTTCAACCCTGTGGCACCAACAATTATGATGAAATTTCTTAATCGAATTGTGACTA
TAGAAGCTAGTAAGAATGGAGAAAAAATTATTGTTCCTAATAAAACTTCTCTGGAGTTGCTCTGTCAAGG
ATGTTCTGGTGATATCAGAAGTGCAATAAACAGCCTGCAGTTCTCGTCTTCAAAAGGAGAGAACAGTTCG
TGGTCAAAGAAGAAAAGAATGTCATTGAAATCGGATGCTGCCATATCAAAATCAAAACAAAAAAAGAAAC
ATAATAGTACTTTGGAAAATCAAGAGATTCAAGCTATTGGTGGAAAAGATGTTTCTCTTTTTCTCTTCAG
AGCTTTGGGGAAGATTCTGTACTGTAAAAGAGCGCCTTTAACAGAGTTAGACTCACCTCGCCTGCCTGCT
CACTTGTCAGAGCACGACCGGGACACTTTACTTGTTCAGCCTGAGGAAATAGTAGAAATGTCACACATGC
CAGGAGACTTTTTTAATTTATACCTTCACCAAAACTACATAGATTTCTTCGCTGAAGTAGATGATCTTGT
GCCAGCCAGTGAGTTTCTGAGTTTTGCAGATATCCTCGGTGGTGATTGGAATACACGCTCGTTACTCAGG
GAATATAGTACATCCGTAGCTACAAGAGGTGTGATGCATTCCAACAAAGCCCGGGGGTTCGCTCACTGCC
AAGGAGGATCAAGCTTTCGACCCTTACATAAGCCCCAGTGGTTTCTAATACAGAAAAAGTATCGGGAAAA
TTGCCTGGCAGCAAAAGCACTCTTTGTTGACTTCTGCCTACCAGCTTTGTGTCTCCAGACTCAGCTCTTG
CCATATCTTGCTCTTCTGACCATTCCAATGCGAAATAAAGCTCAGATTTCTTTTATCCAAGATGTTGGAA
GACTTCCTTTGAAGCGAAGCTTTGGAAGGTTGAAAATGGAAGCCCTGACTGACCGAGAGCTGGGGCTGAT
AGACCCTGACAGTGGGGATGAGTCCCCGCACAGCGGAGGGCAGCCGGCTCAGGAAGCTCCCGGTGAACCC
GCGCAGGCTGCTCAGAATGCCGACCCAGAGACCTGGTCCCTTCCGCTGAGTCAGAACAGCGGGAGCGATC
TGCCTGCCAGCCAGCCTCAGCCCTTTTCCTCCAAAGTGGACATGGAAGAAGAGGAGGAGGAAGAGGAAGA
CATAATAATAGAGGACTATGACAGCGAGGAGACATAG

Translation (688 aa):
MSETFLRPKVSSTKVTDWVAPAFDDFEANTAITTITASSLTFSNSSHRRKYLPSTLESNRLSARKRGRLS
LEQTHGLETSRERLSDNEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLEVKPKQGGSVLLITGPPGC
GKTTTIKILSKELGIQVQEWVNPILPDFQKDDYKELLSLESNFSVVPYQSQIAVFNDFLLRATKYSKLQM
LGDDLTTDKKIILVEELPNQFYRDPNALHEILRKHVQIGRCPLVFIVSDSVSGDNNQRLLFPRNIQEECS
VSNISFNPVAPTIMMKFLNRIVTIEASKNGEKIIVPNKTSLELLCQGCSGDIRSAINSLQFSSSKGENSS
WSKKKRMSLKSDAAISKSKQKKKHNSTLENQEIQAIGGKDVSLFLFRALGKILYCKRAPLTELDSPRLPA
HLSEHDRDTLLVQPEEIVEMSHMPGDFFNLYLHQNYIDFFAEVDDLVPASEFLSFADILGGDWNTRSLLR
EYSTSVATRGVMHSNKARGFAHCQGGSSFRPLHKPQWFLIQKKYRENCLAAKALFVDFCLPALCLQTQLL
PYLALLTIPMRNKAQISFIQDVGRLPLKRSFGRLKMEALTDRELGLIDPDSGDESPHSGGQPAQEAPGEP
AQAAQNADPETWSLPLSQNSGSDLPASQPQPFSSKVDMEEEEEEEEDIIIEDYDSEET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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