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Report for CCDS16318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16318.1 Public Mus musculus 2 Or5d47 23 108 98 CCDS HistoryNCBI Gene:117005Re-query CCDS DB by CCDS ID:16318.1Re-query CCDS DB by GeneID:117005See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099840.1 ENSMUSP00000097428.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099840.1Link to Ensembl Protein Viewer:ENSMUSP00000097428.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099840Re-query CCDS DB by Protein ID:ENSMUSP00000097428
Original member Current member NCBI NM_054091.2 NP_473432.2 Accepted alive Link to Nucleotide Sequence:NM_054091.2Link to Protein Sequence:NP_473432.2Re-query CCDS DB by Nucleotide ID:NM_054091Re-query CCDS DB by Protein ID:NP_473432Link to BLAST:NP_473432.2

Chromosomal Locations for CCDS 16318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87973707 87974663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGATACTGTCTGAAAAAAACAATAGTGGGATTATTTTCACCCTCTTGGTCTTCTCAGATTATCCTGACC
TTAAAGTCCCTCTCTTCTTGGTGTTTCTCGTCATTTACAGCATCACTGTGGTAGGAAATATTGGTATGAT
CCTCGTGATCAGAATTAATCCCCAACTGCATTCCCCTATGTACTTCTTCCTCAGCCACCTCTCCTTTGTG
GATTTCTGCTATTCTTCCATCATTGCTCCCAAGATGCTGGTGAACCTTGTTGCAAAAGACATAACCATTT
CATTTGTAGAATGCATAGTACAATATTTTTTATTTTGTGTCTTTGTAGTAACTGAAGCCTTTTTATTAGT
GGTTATGGCATATGACCGATTTGTGGCTATCTGTAACCCTCTGCTCTACACAGTAGCCATGTCCCAGAAA
CTCTGTATCACACTGGTGGTGGGATCCTACGCATGGGGGTTCACATGTTCCTTGACACTGACGTGTTCTA
CTGTGCAATTATCTTTTCATGGTGTCAATAGGATCGATCACTTCTTCTGTGAACTCTCTTCACTGCTAGC
CCTTTCTTCCTCTGATACTCTCATCAGTCAATTACTGCTGTTTGTCTTTGCCACATTTAATGCTGTCAGC
ACATTACTCCTTATTCTGCTGTCTTACCTGTTCATTGTTGTCACTGTCCTTAAGATGCGTTCAGCCAGTG
GGCGTCGTAAGGCTTTCTCCACCTGTGCATCCCACCTGGCAGCCATCACTATCTTCCATGGTACCATTTT
ATTCCTTTTTTGTGTGCCCAACTCTAAGAATTCCAGGCTCACAGTCAAAGTGGGCTCTGTGTTTTACACA
GTGGTGATCCCCATGCTTAACCCCATAATCTATAGTCTGAGAAATAAGGATGTCCAAGATACAATTAGAA
AAATAATGACCCTTATCTCATGTGTTAAGAATGATAGACACAATTAA

Translation (318 aa):
MILSEKNNSGIIFTLLVFSDYPDLKVPLFLVFLVIYSITVVGNIGMILVIRINPQLHSPMYFFLSHLSFV
DFCYSSIIAPKMLVNLVAKDITISFVECIVQYFLFCVFVVTEAFLLVVMAYDRFVAICNPLLYTVAMSQK
LCITLVVGSYAWGFTCSLTLTCSTVQLSFHGVNRIDHFFCELSSLLALSSSDTLISQLLLFVFATFNAVS
TLLLILLSYLFIVVTVLKMRSASGRRKAFSTCASHLAAITIFHGTILFLFCVPNSKNSRLTVKVGSVFYT
VVIPMLNPIIYSLRNKDVQDTIRKIMTLISCVKNDRHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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