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Report for CCDS30215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30215.1 Public Mus musculus X L1cam 23 108 98 CCDS HistoryNCBI Gene:16728Re-query CCDS DB by CCDS ID:30215.1Re-query CCDS DB by GeneID:16728See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102871.9 ENSMUSP00000099935.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102871.9Link to Ensembl Protein Viewer:ENSMUSP00000099935.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102871Re-query CCDS DB by Protein ID:ENSMUSP00000099935
Original member Current member NCBI NM_008478.3 NP_032504.3 Accepted alive Link to Nucleotide Sequence:NM_008478.3Link to Protein Sequence:NP_032504.3Re-query CCDS DB by Nucleotide ID:NM_008478Re-query CCDS DB by Protein ID:NP_032504Link to BLAST:NP_032504.3

Chromosomal Locations for CCDS 30215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73855035 73855266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73855652 73855663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73855759 73855831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73856143 73856280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73856632 73856793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73856903 73857022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73857168 73857341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73857421 73857543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73857638 73857839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73858042 73858157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73859303 73859525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73859702 73859772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73860019 73860216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73860439 73860549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73860720 73860844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73861048 73861204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73861306 73861472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73861582 73861693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73862278 73862421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73862560 73862691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73862848 73863032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73863157 73863268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73864159 73864329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73864424 73864546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73865617 73865816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73866055 73866160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73867022 73867036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73869729 73869804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3780 nt):
ATGGTCGTGATGCTGCGGTACGTGTGGCCTCTCCTCCTCTGCAGCCCCTGCCTGCTCATACAGATTCCAG
ACGAATATAAAGGACACCATGTGCTAGAGCCACCTGTCATCACGGAACAGTCTCCACGGCGCCTGGTTGT
CTTCCCAACAGATGACATAAGCCTGAAATGTGAAGCCAGAGGCAGACCCCAAGTGGAGTTCCGCTGGACG
AAAGATGGCATCCACTTCAAACCCAAGGAAGAATTGGGTGTAGTGGTGCATGAGGCACCCTATTCTGGCT
CCTTCACCATCGAAGGCAACAACAGCTTTGCCCAGAGGTTTCAGGGCATCTATCGCTGCTATGCCAGCAA
TAAGCTAGGAACTGCCATGTCGCATGAGATCCAGCTCGTGGCCGAGGGTGCCCCCAAGTGGCCGAAGGAG
ACTGTAAAACCTGTGGAAGTGGAGGAAGGAGAATCAGTAGTTCTGCCTTGCAACCCTCCACCCAGTGCAG
CCCCACTTAGGATCTACTGGATGAACAGCAAGATTTTGCACATCAAACAAGATGAGCGGGTGTCCATGGG
CCAGAATGGAGACCTATATTTTGCCAATGTGCTTACCTCAGACAATCATTCAGACTACATCTGCAATGCC
CACTTCCCTGGTACCCGGACCATCATTCAAAAGGAACCTATTGACCTCCGGGTCAAGCCCACCAACAGCA
TGATTGACCGGAAGCCACGTCTGCTCTTTCCCACAAACTCCAGCAGCCGCCTGGTAGCCTTGCAGGGCCA
GTCATTGATCCTGGAGTGCATTGCTGAGGGATTCCCTACACCCACCATCAAGTGGCTGCACCCCAGTGAC
CCAATGCCAACAGACCGTGTTATCTACCAAAACCACAACAAGACCCTGCAACTACTCAATGTGGGCGAAG
AGGACGATGGCGAGTATACCTGCCTTGCTGAGAACTCGCTGGGCAGTGCCCGGCATGCCTACTATGTTAC
TGTGGAAGCTGCCCCATATTGGCTGCAGAAGCCCCAGAGCCATTTGTATGGTCCAGGAGAGACTGCCCGC
CTAGACTGCCAAGTCCAGGGCAGGCCCCAACCAGAGATCACTTGGAGAATCAACGGAATGTCTATGGAGA
CGGTGAACAAGGACCAGAAGTACCGGATTGAGCAGGGGTCTCTGATCTTGAGTAACGTGCAGCCAAGTGA
CACAATGGTGACCCAGTGTGAAGCCCGCAACCAGCATGGGCTCCTGCTAGCCAATGCCTACATTTATGTT
GTCCAGCTGCCAGCCAGGATCCTAACAAAAGACAATCAGACATACATGGCAGTTGAGGGCAGTACTGCTT
ACTTGCTGTGCAAAGCCTTTGGAGCTCCTGTTCCCAGTGTCCAGTGGCTGGATGAAGAAGGAACCACAGT
GCTTCAGGATGAACGATTTTTCCCCTATGCCAATGGAACGCTGAGCATCAGAGACCTCCAGGCCAATGAC
ACTGGACGCTATTTCTGCCAGGCTGCCAATGACCAGAACAATGTGACCATTTTGGCTAACCTACAGGTTA
AAGAAGCAACCCAGATCACACAGGGGCCCCGGAGCGCAATTGAGAAGAAAGGTGCAAGGGTGACATTCAC
GTGCCAGGCCTCCTTTGACCCCTCTTTGCAGGCCAGCATCACTTGGCGTGGAGATGGGAGAGACCTACAG
GAACGTGGGGACAGTGACAAGTATTTCATAGAAGATGGGAAACTAGTCATCCAGAGCCTGGACTACAGTG
ACCAGGGCAACTACAGTTGTGTGGCCAGCACTGAACTGGATGAGGTGGAGAGCAGGGCACAGCTCTTAGT
GGTGGGGAGCCCTGGGCCAGTGCCTCACCTGGAGCTGTCCGACCGCCACCTGCTGAAGCAGAGCCAGGTG
CACTTGTCTTGGAGCCCTGCTGAAGACCACAACTCTCCCATTGAGAAGTATGACATTGAATTTGAGGACA
AGGAAATGGCTCCTGAGAAATGGTTCAGTCTGGGCAAGGTGCCAGGAAATCAGACCTCTACTACCCTCAA
GCTGTCCCCCTATGTCCACTACACCTTTCGGGTCACTGCCATTAACAAATATGGTCCTGGAGAACCCAGC
CCTGTCTCTGAGACTGTGGTCACACCTGAGGCAGCCCCAGAGAAGAACCCTGTGGATGTGAGAGGGGAAG
GGAATGAGACCAACAATATGGTCATCACATGGAAGCCCCTTCGGTGGATGGATTGGAATGCCCCCCAGAT
TCAGTACCGTGTACAGTGGCGTCCACAGGGCAAGCAGGAGACCTGGAGGGAACAGACCGTGAGCGACCCT
TTCCTGGTGGTGTCTAACACTTCCACATTTGTGCCTTATGAGATCAAAGTCCAGGCAGTGAACAACCAGG
GCAAGGGCCCTGAGCCCCAGGTCACCATTGGCTATTCAGGGGAAGACTACCCCCAGGTGAGCCCTGAACT
TGAAGACATCACAATCTTCAACTCAAGTACTGTGCTTGTCAGGTGGAGGCCTGTGGACTTGGCCCAGGTT
AAGGGCCACCTCAAGGGATACAATGTAACATACTGGTGGAAGGGCAGCCAGAGAAAGCACAGCAAGAGGC
ATATCCACAAAAGCCACATAGTGGTACCTGCAAATACCACCAGTGCCATCCTCAGTGGTTTGCGCCCTTA
CAGCTCTTACCATGTGGAGGTACAGGCCTTTAATGGGCGGGGCTTGGGGCCTGCGAGTGAATGGACCTTC
AGCACCCCAGAGGGAGTGCCTGGCCACCCTGAGGCATTACACCTGGAGTGTCAGTCGGACACTAGTCTGC
TACTGCACTGGCAGCCACCACTCAGCCACAATGGAGTGCTCACTGGCTACCTGCTCTCTTACCATCCCGT
GGAAGGGGAAAGCAAAGAGCAGTTGTTCTTCAACCTTTCGGACCCAGAACTCCGGACTCATAATCTGACC
AACCTCAACCCTGATCTACAGTACCGCTTCCAGCTTCAGGCCACCACCCAACAGGGTCCTGGTGAGGCCA
TCGTGCGTGAAGGAGGCACCATGGCCCTGTTTGGCAAGCCAGATTTTGGCAACATCTCAGCCACAGCAGG
TGAAAACTACAGCGTGGTCTCCTGGGTCCCTCGGAAGGGCCAGTGCAATTTCAGGTTCCATATCTTGTTC
AAAGCCTTACCAGAAGGGAAAGTGAGCCCTGATCACCAGCCTCAGCCTCAGTATGTCAGCTACAATCAGA
GCTCCTACACACAATGGAACCTACAGCCTGACACCAAATATGAGATCCACCTGATAAAGGAGAAGGTCCT
CCTGCACCATCTGGATGTGAAGACTAATGGAACTGGCCCTGTGCGAGTTTCTACTACAGGTAGCTTTGCC
TCCGAGGGCTGGTTCATCGCCTTTGTCAGCGCTATCATTCTCTTGCTCCTCATCCTGCTCATCCTCTGCT
TCATCAAACGCAGCAAGGGTGGCAAATACTCAGTGAAGGACAAGGAGGACACTCAGGTAGATTCCGAGGC
CCGGCCCATGAAAGACGAGACCTTCGGCGAGTACAGGTCCCTGGAGAGTGACAATGAAGAGAAGGCCTTT
GGCAGCAGCCAGCCATCTCTCAACGGAGACATCAAACCCCTAGGCAGTGATGACAGCCTGGCTGATTATG
GGGGCAGTGTGGACGTCCAGTTCAATGAGGATGGCTCTTTCATCGGCCAGTACAGTGGCAAGAAAGAGAA
GGAGGCAGCAGGAGGCAATGACAGTTCAGGGGCTACCTCTCCTATCAATCCTGCAGTAGCCCTAGAATAG

Translation (1259 aa):
MVVMLRYVWPLLLCSPCLLIQIPDEYKGHHVLEPPVITEQSPRRLVVFPTDDISLKCEARGRPQVEFRWT
KDGIHFKPKEELGVVVHEAPYSGSFTIEGNNSFAQRFQGIYRCYASNKLGTAMSHEIQLVAEGAPKWPKE
TVKPVEVEEGESVVLPCNPPPSAAPLRIYWMNSKILHIKQDERVSMGQNGDLYFANVLTSDNHSDYICNA
HFPGTRTIIQKEPIDLRVKPTNSMIDRKPRLLFPTNSSSRLVALQGQSLILECIAEGFPTPTIKWLHPSD
PMPTDRVIYQNHNKTLQLLNVGEEDDGEYTCLAENSLGSARHAYYVTVEAAPYWLQKPQSHLYGPGETAR
LDCQVQGRPQPEITWRINGMSMETVNKDQKYRIEQGSLILSNVQPSDTMVTQCEARNQHGLLLANAYIYV
VQLPARILTKDNQTYMAVEGSTAYLLCKAFGAPVPSVQWLDEEGTTVLQDERFFPYANGTLSIRDLQAND
TGRYFCQAANDQNNVTILANLQVKEATQITQGPRSAIEKKGARVTFTCQASFDPSLQASITWRGDGRDLQ
ERGDSDKYFIEDGKLVIQSLDYSDQGNYSCVASTELDEVESRAQLLVVGSPGPVPHLELSDRHLLKQSQV
HLSWSPAEDHNSPIEKYDIEFEDKEMAPEKWFSLGKVPGNQTSTTLKLSPYVHYTFRVTAINKYGPGEPS
PVSETVVTPEAAPEKNPVDVRGEGNETNNMVITWKPLRWMDWNAPQIQYRVQWRPQGKQETWREQTVSDP
FLVVSNTSTFVPYEIKVQAVNNQGKGPEPQVTIGYSGEDYPQVSPELEDITIFNSSTVLVRWRPVDLAQV
KGHLKGYNVTYWWKGSQRKHSKRHIHKSHIVVPANTTSAILSGLRPYSSYHVEVQAFNGRGLGPASEWTF
STPEGVPGHPEALHLECQSDTSLLLHWQPPLSHNGVLTGYLLSYHPVEGESKEQLFFNLSDPELRTHNLT
NLNPDLQYRFQLQATTQQGPGEAIVREGGTMALFGKPDFGNISATAGENYSVVSWVPRKGQCNFRFHILF
KALPEGKVSPDHQPQPQYVSYNQSSYTQWNLQPDTKYEIHLIKEKVLLHHLDVKTNGTGPVRVSTTGSFA
SEGWFIAFVSAIILLLLILLILCFIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESDNEEKAF
GSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAAGGNDSSGATSPINPAVALE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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