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Report for CCDS86260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86260.1 Public Homo sapiens 11 SNX19 24 110 108 CCDS HistoryNCBI Gene:399979Re-query CCDS DB by CCDS ID:86260.1Re-query CCDS DB by GeneID:399979See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86260.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000534726.5 ENSP00000433699.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534726.5Link to Ensembl Protein Viewer:ENSP00000433699.1Re-query CCDS DB by Nucleotide ID:ENST00000534726Re-query CCDS DB by Protein ID:ENSP00000433699
Original member Current member NCBI NM_001347927.2 NP_001334856.1 Accepted alive Link to Nucleotide Sequence:NM_001347927.2Link to Protein Sequence:NP_001334856.1Re-query CCDS DB by Nucleotide ID:NM_001347927Re-query CCDS DB by Protein ID:NP_001334856Link to BLAST:NP_001334856.1

Chromosomal Locations for CCDS 86260.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 130878422 130878554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130879624 130879711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130880622 130880806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130903255 130903384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130905953 130906115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGTCTGCGATGGAATCTTTTATTGAAAAACAGACAAAGTTACTGGAAATGCAGCCAACAAAAGCCCCAG
AAAAAGATCCTGAACAACCTCCCAAAGGACGTGTGGACAGTTGCGTGTCAGATGCAGCCGTGCCAGCCCA
AGACCCCAGCAACAGCGATCCAGGAACAGAGACAGAGTTAGCTGACACAGCCCTGGATCTGCTCCTCTTG
CTACTAACAGAACAGTGGAAATGGCTATGTACCGAAAACATGCAAAAGTTTCTTCGTCTTATCTTTGGGA
CCCTAGTTCAAAGGTGGCTAGAGGTGCAGGTAGCTAATTTAACAAGTCCACAGCGCTGGGTGCAGTACCT
CCTGCTTCTTCAGGAGTCCATCTGGCCTGGTGGAGTTTTGCCTAAGTTTCCACGGCCCGTAAGGACCCAA
GAGCAGAAACTGGCTGCTGAGAAACAGGCTTTGCAGAGCCTGATGGGAGTCCTCCCAGATCTCGTAGTAG
AAATTCTTGGGGTGAACAAATGCCGGCTGAGCTGGGGTCTAGTCCTGGAGTCACTACAACAACCCCTCAT
CAACAGGCATTTGATTTACTGCCTTGGGGACATCATCCTGGAATTCTTGGATCTCAGTGCCTCTGTTGAG
GAGTCTGCTGCTACCACCTCTGCCTCAGATACCCCAGGCAACTCTAAGAGGATGGGTGTCTCCTCTTAG

Translation (232 aa):
MSAMESFIEKQTKLLEMQPTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELADTALDLLLL
LLTEQWKWLCTENMQKFLRLIFGTLVQRWLEVQVANLTSPQRWVQYLLLLQESIWPGGVLPKFPRPVRTQ
EQKLAAEKQALQSLMGVLPDLVVEILGVNKCRLSWGLVLESLQQPLINRHLIYCLGDIILEFLDLSASVE
ESAATTSASDTPGNSKRMGVSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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