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Report for CCDS18253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18253.1 Public Mus musculus 4 Orm2 23 108 98 CCDS HistoryNCBI Gene:18406Re-query CCDS DB by CCDS ID:18253.1Re-query CCDS DB by GeneID:18406See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18253.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075341.3 ENSMUSP00000074810.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075341.3Link to Ensembl Protein Viewer:ENSMUSP00000074810.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075341Re-query CCDS DB by Protein ID:ENSMUSP00000074810
Original member Current member NCBI NM_011016.2 NP_035146.1 Accepted alive Link to Nucleotide Sequence:NM_011016.2Link to Protein Sequence:NP_035146.1Re-query CCDS DB by Nucleotide ID:NM_011016Re-query CCDS DB by Protein ID:NP_035146Link to BLAST:NP_035146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035146.1 207 P07361 207 100% 0 0

Chromosomal Locations for CCDS 18253.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 63362487 63362603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63362944 63363086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63363294 63363364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63363918 63364025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63364162 63364265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63365685 63365765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGCACTGCACATGATTCTTGTCATGGTGAGCCTCCTGCCGCTGTTGGAAGCTCAGAACCCAGAACATG
TCAACATCACCATAGGCGACCCTATCACCAATGAGACCCTGAGCTGGCTCTCTGACAAATGGTTTTTCAT
TGGTGCGGCTGTCCTAAACCCTGATTACCGGCAGGAAATTCAAAAGACGCAGATGGTATTTTTTAACCTT
ACCCCCAACTTGATAAATGACACGATGGAGCTTCGAGAGTATCACACCATAGATGACCACTGTGTCTATA
ACTCCACTCATCTAGGAATCCAGAGAGAGAATGGGACCCTCTCCAAGTATGTAGGAGGAGTAAAAATCTT
TGCAGACCTGATAGTCTTGAAGATGCATGGGGCCTTCATGCTTGCCTTTGACTTGAAGGATGAGAAGAAA
CGGGGACTGTCCCTCAATGCAAAAAGGCCAGATATCACCCCGGAGCTGCGGGAAGTATTCCAGAAGGCTG
TCACACACGTGGGCATGGATGAATCAGAAATCATATTTGTCGACTGGAAAAAGGACAGGTGCAGTCAGCA
GGAGAAGCAGCAGCTTGAGCTGGAGAAGGAGACCAAGAAAGATCCTGAGGAAGGCCAGGCATGA

Translation (207 aa):
MALHMILVMVSLLPLLEAQNPEHVNITIGDPITNETLSWLSDKWFFIGAAVLNPDYRQEIQKTQMVFFNL
TPNLINDTMELREYHTIDDHCVYNSTHLGIQRENGTLSKYVGGVKIFADLIVLKMHGAFMLAFDLKDEKK
RGLSLNAKRPDITPELREVFQKAVTHVGMDESEIIFVDWKKDRCSQQEKQQLELEKETKKDPEEGQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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