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Report for CCDS39417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39417.1 Public Mus musculus 6 Calcr 23 108 98 CCDS HistoryNCBI Gene:12311Re-query CCDS DB by CCDS ID:39417.1Re-query CCDS DB by GeneID:12311See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075644.12 ENSMUSP00000075070.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075644.12Link to Ensembl Protein Viewer:ENSMUSP00000075070.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075644Re-query CCDS DB by Protein ID:ENSMUSP00000075070
Original member Current member EBI ENSMUST00000170266.2 ENSMUSP00000132124.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170266.2Link to Ensembl Protein Viewer:ENSMUSP00000132124.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170266Re-query CCDS DB by Protein ID:ENSMUSP00000132124
Original member Current member NCBI NM_007588.2 NP_031614.2 Accepted alive Link to Nucleotide Sequence:NM_007588.2Link to Protein Sequence:NP_031614.2Re-query CCDS DB by Nucleotide ID:NM_007588Re-query CCDS DB by Protein ID:NP_031614Link to BLAST:NP_031614.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031614.2 533 Q60755-1 533 100% 0 0

Chromosomal Locations for CCDS 39417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3687395 3687643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3691532 3691573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3692542 3692760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3693701 3693767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3693849 3693909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3700127 3700280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3707489 3707599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3708486 3708612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3711448 3711539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3714649 3714761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3717092 3717202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3718565 3718718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3722923 3723001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3752952 3752974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGACTCCAAGGAGGTCCAGAGTGAAAAGGCGGAATCTCCGCAAACCGAAGATGAGGTTCCTTCTCGTGA
ACAGGTTCACCCTGCTGCTCCTGCTCCTAGTGAGCCCAACTCCAGTTCTTCAGGCTCCTACCAATCTCAC
TGACTCCGGCCTTGATCAGGAGCCATTCCTGTACTTGGTTGGCCGCAAGAAGCTGCTGGATGCTCAGTAC
AAATGCTATGACCGGATTCATCAGTTGCCCTCTTATGAAGGAGAAGGTCTGTACTGCAACCGCACCTGGG
ATGGCTGGATGTGCTGGGACGACACTCCCGCTGGAGCCACAGCCTATCAGCACTGCCCTGACTACTTCCC
GGACTTTGACACAGCAGAAAAGGTTTCAAAATACTGTGATGAAAATGGAGAGTGGTTTAGACACCCTGAC
AGCAACCGAACCTGGTCCAACTATACTCTGTGCAACGCTTTCACTTCTGAGAAACTGCAAAATGCGTACG
TTCTTTATTACCTGGCTCTTGTGGGTCACTCCTTGTCGATTGCTGCTTTGGTTGCTTCCATGCTGATCTT
CTGGATTTTCAAGAACCTTAGCTGCCAGAGGGTGACCTTGCACAAGCACATGTTCCTTACTTATATTCTG
AATTCTATCATTATCATCATCCACCTGGTTGAGGTTGTGCCCAATGGAGATCTGGTGCGGCGGGATCCTA
TGCATATTTTTCATCATAACACACATATGTGGACAATGCAGTGGGAACTGTCACCACCCTTACCCCTGAG
TGCACACGAGGGAAAGATGGACCCTCATGCCAGTGAAGTGATAAGTTGCAAGGTTCTACACTTTTTACAT
CAGTACATGATGTCTTGCAACTACTTCTGGATGCTCTGCGAGGGGATCTATCTTCATACTCTGATTGTCA
TGGCTGTGTTTACCGACGAGCAACGCCTACGCTGGTACTATCTTCTTGGCTGGGGGTTCCCGATAGTGCC
AACCATTATCCACGCCATCACTCGTGCCCTCTACTACAACGACAACTGCTGGCTGAGTGCAGAAACCCAC
TTGCTTTACATCATCCATGGACCCGTCATGGTGGCTCTGGTGGTCAACTTCTTCTTTCTTCTCAACATTG
TCCGCGTGCTTGTGACCAAGATGAGGCAAACCCACGAGGCCGAGTCCTACATGTACCTGAAGGCTGTGAA
GGCCACCATGGTCCTTGTGCCCCTGCTGGGGATCCAGTTTGTTGTGTTTCCCTGGAGGCCCTCCAACAAG
GTGCTTGGGAAGATCTATGATTATCTCATGCACTCTCTGATTCATTTCCAGGGATTCTTTGTGGCGACTA
TCTACTGCTTCTGCAACCATGAGGTGCAAGTCACCCTGAAGCGCCAGTGGACGCAGTTCAAGATCCAGTG
GAGCCAACGCTGGGGAAGGCGCCGCCGCCCCACCAACCGCGTAGTTAGTGCTCCTCGGGCTGTAGCCTTC
GCTGAGCCAGATGGCCTCCCCATTTACATCTGCCATCAGGAACCACGGAATCCTCCAATCAGCAACAACG
AAGGCGAGGAGAGTACTGAAATGATCCCCATGAACGTCATCCAGCAAGACGCATCCGCTTGA

Translation (533 aa):
MTPRRSRVKRRNLRKPKMRFLLVNRFTLLLLLLVSPTPVLQAPTNLTDSGLDQEPFLYLVGRKKLLDAQY
KCYDRIHQLPSYEGEGLYCNRTWDGWMCWDDTPAGATAYQHCPDYFPDFDTAEKVSKYCDENGEWFRHPD
SNRTWSNYTLCNAFTSEKLQNAYVLYYLALVGHSLSIAALVASMLIFWIFKNLSCQRVTLHKHMFLTYIL
NSIIIIIHLVEVVPNGDLVRRDPMHIFHHNTHMWTMQWELSPPLPLSAHEGKMDPHASEVISCKVLHFLH
QYMMSCNYFWMLCEGIYLHTLIVMAVFTDEQRLRWYYLLGWGFPIVPTIIHAITRALYYNDNCWLSAETH
LLYIIHGPVMVALVVNFFFLLNIVRVLVTKMRQTHEAESYMYLKAVKATMVLVPLLGIQFVVFPWRPSNK
VLGKIYDYLMHSLIHFQGFFVATIYCFCNHEVQVTLKRQWTQFKIQWSQRWGRRRRPTNRVVSAPRAVAF
AEPDGLPIYICHQEPRNPPISNNEGEESTEMIPMNVIQQDASA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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