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Report for CCDS47436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47436.1 Public Homo sapiens 6 CAPN11 24 110 108 CCDS HistoryNCBI Gene:11131Re-query CCDS DB by CCDS ID:47436.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47436.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398776.2 ENSP00000381758.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398776.2Link to Ensembl Protein Viewer:ENSP00000381758.1Re-query CCDS DB by Nucleotide ID:ENST00000398776Re-query CCDS DB by Protein ID:ENSP00000381758
Original member Current member NCBI NM_007058.4 NP_008989.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007058.4Link to Protein Sequence:NP_008989.2Re-query CCDS DB by Nucleotide ID:NM_007058Re-query CCDS DB by Protein ID:NP_008989Link to BLAST:NP_008989.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008989.2 739 Q9UMQ6 739 100% 0 0

Chromosomal Locations for CCDS 47436.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 44158849 44158864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44166758 44166829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44169281 44169531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44169906 44169975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44172302 44172420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44172940 44173073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44173218 44173386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44176068 44176151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44176253 44176338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44176581 44176655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44176838 44176998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44177242 44177420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44179619 44179630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44179952 44180163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44180460 44180499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44180597 44180662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44180748 44180805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44180933 44180997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44181252 44181320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44182941 44183019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44183119 44183235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44183705 44183763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44183906 44183932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGCTGTACTCCCCAGGGCCGAGTCTTCCGGAGTCAGCAGAGAGCCTGGATGGATCACAGGAGGATAAGC
CTCGGGGCTCATGTGCGGAGCCCACTTTTACTGATACGGGAATGGTGGCTCACATAAACAACAGCCGGCT
CAAGGCCAAGGGCGTGGGCCAGCACGACAACGCCCAGAACTTTGGTAACCAGAGCTTTGAGGAGCTGCGA
GCAGCCTGTCTAAGAAAGGGGGAGCTCTTCGAGGACCCCTTATTCCCTGCTGAACCCAGCTCACTGGGCT
TCAAGGACCTGGGCCCCAACTCCAAAAATGTGCAGAACATCTCCTGGCAGCGGCCCAAGGATATCATAAA
CAACCCTCTATTCATCATGGATGGGATTTCTCCAACAGACATCTGCCAGGGGATCCTCGGGGACTGCTGG
CTGCTGGCTGCCATCGGCTCCCTTACCACCTGCCCCAAACTGCTATACCGCGTGGTGCCCAGAGGACAGA
GCTTCAAGAAAAACTATGCTGGCATCTTCCATTTTCAGATTTGGCAGTTTGGACAGTGGGTGAACGTGGT
GGTAGATGACCGGCTGCCCACAAAGAATGACAAGCTGGTGTTTGTGCACTCAACCGAACGCAGTGAGTTC
TGGAGTGCCCTGCTGGAGAAGGCGTATGCCAAGCTGAGTGGGTCCTATGAAGCATTGTCAGGGGGCAGTA
CCATGGAGGGCCTTGAGGACTTCACAGGAGGCGTGGCCCAGAGCTTCCAACTCCAGAGGCCCCCTCAGAA
CCTGCTCAGGCTCCTTAGGAAGGCCGTGGAGCGATCCTCCCTCATGGGTTGCTCCATTGAAGTCACCAGT
GATAGTGAACTGGAATCCATGACTGACAAGATGCTGGTGAGAGGGCACGCTTACTCTGTGACTGGCCTTC
AGGATGTCCACTACAGAGGCAAAATGGAAACACTGATTCGGGTCCGGAATCCCTGGGGCCGGATTGAGTG
GAATGGAGCTTGGAGTGACAGTGCCAGGGAGTGGGAAGAGGTGGCCTCAGACATCCAGATGCAGCTGCTG
CACAAGACGGAGGACGGGGAGTTCTGGATGTCCTACCAAGATTTCCTGAACAACTTCACGCTCCTGGAGA
TCTGCAACCTCACGCCTGATACACTCTCTGGGGACTACAAGAGCTACTGGCACACCACCTTCTACGAGGG
CAGCTGGCGCAGAGGCAGCTCCGCAGGGGGCTGCAGGAACCACCCTGGCACGTTCTGGACCAACCCCCAG
TTTAAGATCTCTCTTCCTGAGGGGGATGACCCAGAGGATGACGCAGAGGGCAATGTTGTGGTCTGCACCT
GCCTGGTGGCCCTAATGCAGAAGAACTGGCGGCATGCACGGCAGCAGGGAGCCCAGCTGCAGACCATTGG
CTTTGTCCTCTACGCGGTCCCAAAAGAGTTTCAGAACATTCAGGATGTCCACTTGAAGAAGGAATTCTTC
ACGAAGTATCAGGACCACGGCTTCTCAGAGATCTTCACCAACTCACGGGAGGTGAGCAGCCAACTCCGGC
TGCCTCCGGGGGAATATATCATTATTCCCTCCACCTTTGAGCCACACAGAGATGCTGACTTCCTGCTTCG
GGTCTTCACCGAGAAGCACAGCGAGTCATGGGAATTGGATGAAGTCAACTATGCTGAGCAACTCCAAGAG
GAAAAGGTCTCTGAGGATGACATGGACCAGGACTTCCTACATTTGTTTAAGATAGTGGCAGGAGAGGGCA
AGGAGATAGGGGTGTATGAGCTCCAGAGGCTGCTCAACAGGATGGCCATCAAATTCAAAAGCTTCAAGAC
CAAGGGCTTTGGCCTGGATGCTTGCCGCTGCATGATCAACCTCATGGATAAAGATGGCTCTGGCAAGCTG
GGGCTTCTAGAGTTCAAGATCCTGTGGAAAAAACTCAAGAAATGGATGGACATCTTCAGAGAGTGTGACC
AGGACCATTCAGGCACCTTGAACTCCTATGAGATGCGCCTGGTTATTGAGAAAGCAGGCATCAAGCTGAA
CAACAAGGTAATGCAGGTCCTGGTGGCCAGGTATGCAGATGATGACCTGATCATAGACTTTGACAGCTTC
ATCAGCTGTTTCCTGAGGCTAAAGACCATGTTCACATTCTTTCTAACCATGGACCCCAAGAATACTGGCC
ATATTTGCTTGAGCCTGGAACAGTGGCTGCAGATGACCATGTGGGGATAG

Translation (739 aa):
MLYSPGPSLPESAESLDGSQEDKPRGSCAEPTFTDTGMVAHINNSRLKAKGVGQHDNAQNFGNQSFEELR
AACLRKGELFEDPLFPAEPSSLGFKDLGPNSKNVQNISWQRPKDIINNPLFIMDGISPTDICQGILGDCW
LLAAIGSLTTCPKLLYRVVPRGQSFKKNYAGIFHFQIWQFGQWVNVVVDDRLPTKNDKLVFVHSTERSEF
WSALLEKAYAKLSGSYEALSGGSTMEGLEDFTGGVAQSFQLQRPPQNLLRLLRKAVERSSLMGCSIEVTS
DSELESMTDKMLVRGHAYSVTGLQDVHYRGKMETLIRVRNPWGRIEWNGAWSDSAREWEEVASDIQMQLL
HKTEDGEFWMSYQDFLNNFTLLEICNLTPDTLSGDYKSYWHTTFYEGSWRRGSSAGGCRNHPGTFWTNPQ
FKISLPEGDDPEDDAEGNVVVCTCLVALMQKNWRHARQQGAQLQTIGFVLYAVPKEFQNIQDVHLKKEFF
TKYQDHGFSEIFTNSREVSSQLRLPPGEYIIIPSTFEPHRDADFLLRVFTEKHSESWELDEVNYAEQLQE
EKVSEDDMDQDFLHLFKIVAGEGKEIGVYELQRLLNRMAIKFKSFKTKGFGLDACRCMINLMDKDGSGKL
GLLEFKILWKKLKKWMDIFRECDQDHSGTLNSYEMRLVIEKAGIKLNNKVMQVLVARYADDDLIIDFDSF
ISCFLRLKTMFTFFLTMDPKNTGHICLSLEQWLQMTMWG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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