NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23735.1 Public Mus musculus 10 Taar1 23 108 98 CCDS HistoryNCBI Gene:111174Re-query CCDS DB by CCDS ID:23735.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051532.4 ENSMUSP00000049527.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051532.4Link to Ensembl Protein Viewer:ENSMUSP00000049527.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051532Re-query CCDS DB by Protein ID:ENSMUSP00000049527
Original member Current member NCBI NM_053205.1 NP_444435.1 Accepted alive Link to Nucleotide Sequence:NM_053205.1Link to Protein Sequence:NP_444435.1Re-query CCDS DB by Nucleotide ID:NM_053205Re-query CCDS DB by Protein ID:NP_444435Link to BLAST:NP_444435.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444435.1 332 Q923Y8 332 100% 0 0

Chromosomal Locations for CCDS 23735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 23920406 23921404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGCATCTTTGCCACGCTATCACAAACATTTCCCACAGAAACAGCGACTGGTCAAGAGAAGTCCAAGCTT
CCCTGTACAGCTTAATGTCACTCATAATCCTGGCCACTCTGGTTGGCAACTTAATAGTAATAATTTCCAT
ATCCCATTTCAAGCAACTTCATACACCCACCAACTGGCTCCTTCACTCCATGGCCATTGTCGACTTTCTG
CTGGGCTGTCTGATAATGCCCTGCAGCATGGTGAGAACTGTTGAGCGCTGTTGGTATTTTGGGGAAATCC
TCTGTAAAGTTCACACCAGCACCGATATCATGCTGAGCTCCGCCTCCATTTTCCACTTAGCTTTCATTTC
CATTGACCGCTACTGTGCTGTGTGTGACCCTTTGAGATACAAAGCCAAGATCAATATCTCCACTATTCTT
GTGATGATCCTCGTTAGTTGGAGCCTTCCTGCTGTTTATGCATTTGGGATGATCTTCCTGGAACTGAACT
TAAAAGGAGTGGAAGAGCTGTATCGCAGTCAGGTCAGCGACCTGGGCGGCTGTTCTCCCTTCTTTAGTAA
AGTATCTGGGGTACTGGCGTTCATGACTTCCTTCTATATACCTGGATCTGTTATGTTATTTGTTTACTAT
AGGATATATTTCATAGCTAAAGGACAAGCAAGGTCAATCAATCGTACGAATGTTCAAGTTGGATTGGAAG
GGAAAAGCCAAGCACCACAAAGCAAGGAAACAAAAGCCGCGAAGACCTTAGGGATCATGGTGGGCGTTTT
CCTCGTATGCTGGTGCCCGTTCTTTCTCTGCACGGTCCTGGACCCTTTCCTGGGCTATGTTATCCCACCC
TCTCTGAATGACGCACTGTATTGGTTTGGGTACTTGAATTCTGCCCTCAATCCGATGGTTTATGCCTTTT
TCTATCCCTGGTTCAGAAGAGCCTTGAAGATGGTTCTCCTTGGTAAAATTTTCCAAAAAGATTCATCTAG
GTCTAAGCTATTTTTGTAA

Translation (332 aa):
MHLCHAITNISHRNSDWSREVQASLYSLMSLIILATLVGNLIVIISISHFKQLHTPTNWLLHSMAIVDFL
LGCLIMPCSMVRTVERCWYFGEILCKVHTSTDIMLSSASIFHLAFISIDRYCAVCDPLRYKAKINISTIL
VMILVSWSLPAVYAFGMIFLELNLKGVEELYRSQVSDLGGCSPFFSKVSGVLAFMTSFYIPGSVMLFVYY
RIYFIAKGQARSINRTNVQVGLEGKSQAPQSKETKAAKTLGIMVGVFLVCWCPFFLCTVLDPFLGYVIPP
SLNDALYWFGYLNSALNPMVYAFFYPWFRRALKMVLLGKIFQKDSSRSKLFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH