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Report for CCDS27879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27879.1 Public Mus musculus 15 Myg1 23 108 98 CCDS HistoryNCBI Gene:60315Re-query CCDS DB by CCDS ID:27879.1Re-query CCDS DB by GeneID:60315See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113682.8 ENSMUSP00000109312.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113682.8Link to Ensembl Protein Viewer:ENSMUSP00000109312.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113682Re-query CCDS DB by Protein ID:ENSMUSP00000109312
Original member Current member NCBI NM_021713.2 NP_068359.1 Accepted alive Link to Nucleotide Sequence:NM_021713.2Link to Protein Sequence:NP_068359.1Re-query CCDS DB by Nucleotide ID:NM_021713Re-query CCDS DB by Protein ID:NP_068359Link to BLAST:NP_068359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068359.1 380 Q9JK81 380 100% 0 0

Chromosomal Locations for CCDS 27879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102331741 102331953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102332090 102332202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102334202 102334361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102336832 102336984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102337101 102337223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102337329 102337510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102337636 102337834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGGTAGACGTTTCCTGCGTGGTATCTTAACATTGCCGCTCCGGTCAGTTCTCCAAGCCCAGCACCGCA
TGCTTGGCTCAGAGCAGGATCCGCCCGCTAAAAGACCTCGCAACAACCTCATGGCACCGCCCCGAATCGG
GACGCACAACGGCACCTTCCACTGCGATGAAGCTCTGGCTTGCGCGTTGCTCCGCCTCCTGCCCGAGTAC
GCGAACGCAGAGATTGTGCGGACTCGGGATCCTGAAAAGTTGGCTTCGTGTGACATCGTGGTGGATGTGG
GCGGTGAGTACAACCCCCAGAGTCACCGTTATGATCATCACCAGAGGACTTTTACAGAAACCATGAGTTC
ACTGTGCCCTGGAAAGCCATGGCAGACCAAGCTGAGCAGTGCGGGACTTGTCTATTTGCACTTCGGACGT
AAGCTCCTGGCCCAGTTGCTGGGCACTAGTGAAGAGGACAGCGTGGTGGATACCATCTATGACAAGATGT
ATGAGAACTTTGTGGAAGAGGTGGATGCGGTGGACAATGGGATCTCTCAGTGGGCAGAGGGGGAGCCTCG
GTATGCCATGACCACCACACTGAGTGCCCGGGTTGCTCGGCTTAATCCCACCTGGAACCAGCCCAACCAA
GACACTGAGGCAGGGTTCAGGCGAGCAATGGACCTGGTACAAGAGGAGTTTCTGCAAAGACTAAACTTCT
ACCAGCACAGCTGGCTGCCAGCCCGGGCCTTAGTAGAGGAGGCACTGGCCCAGAGATTCAAGGTAGATTC
AAGTGGGGAAATAGTGGAACTCGCAAAAGGTGGATGCCCTTGGAAGGAGCATCTATACCACCTAGAATCT
GAGCTGTCCCCCAAAGTGGCCATTACCTTTGTTATCTACACTGACCAGGCTGGACAGTGGCGAGTCCAGT
GCGTACCCAAGGAGCCTCACTCATTCCAAAGCCGGCTACCCTTGCCCGAGCCATGGAGAGGACTTCGGGA
TAAGGCCCTGGACCAAGTCAGTGGGATCCCTGGTTGCATCTTCGTCCATGCCAGTGGCTTCATTGGTGGG
CACCACACTCGAGAGGGTGCCCTGAACATGGCCCGTGCCACCCTTGCCCAGCGCCCAGCACCTGTGCCTC
TTGCAAATGCTGTAGTCCAATAA

Translation (380 aa):
MGRRFLRGILTLPLRSVLQAQHRMLGSEQDPPAKRPRNNLMAPPRIGTHNGTFHCDEALACALLRLLPEY
ANAEIVRTRDPEKLASCDIVVDVGGEYNPQSHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGR
KLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQWAEGEPRYAMTTTLSARVARLNPTWNQPNQ
DTEAGFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHLYHLES
ELSPKVAITFVIYTDQAGQWRVQCVPKEPHSFQSRLPLPEPWRGLRDKALDQVSGIPGCIFVHASGFIGG
HHTREGALNMARATLAQRPAPVPLANAVVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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