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Report for CCDS84017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84017.1 Public Mus musculus 13 Irf4 23 108 98 CCDS HistoryNCBI Gene:16364Re-query CCDS DB by CCDS ID:84017.1Re-query CCDS DB by GeneID:16364See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84017.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110307.2 ENSMUSP00000105936.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110307.2Link to Ensembl Protein Viewer:ENSMUSP00000105936.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110307Re-query CCDS DB by Protein ID:ENSMUSP00000105936
Original member Current member NCBI NM_001347508.1 NP_001334437.1 Accepted alive Link to Nucleotide Sequence:NM_001347508.1Link to Protein Sequence:NP_001334437.1Re-query CCDS DB by Nucleotide ID:NM_001347508Re-query CCDS DB by Protein ID:NP_001334437Link to BLAST:NP_001334437.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334437.1 449 Q64287-2 449 100% 0 0

Chromosomal Locations for CCDS 84017.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 30750580 30750795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30751680 30751866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30752691 30752779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30753448 30753589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30755138 30755245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30757408 30757761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30761372 30761484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30763527 30763667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGAACTTGGAGACGGGCAGCCGGGGCTCAGAGTTCGGCATGAGCGCAGTGAGCTGCGGCAATGGGAAAC
TCCGACAGTGGTTGATCGACCAGATCGACAGCGGCAAGTACCCCGGGCTGGTGTGGGAGAACGAGGAGAA
GAGCGTCTTCCGCATCCCGTGGAAACACGCGGGCAAGCAGGACTACAATCGTGAGGAGGACGCTGCCCTC
TTCAAGGCTTGGGCATTGTTTAAAGGCAAGTTCCGAGAAGGGATCGACAAGCCAGATCCTCCTACTTGGA
AGACAAGATTACGATGTGCTCTGAACAAGAGCAATGACTTTGAGGAATTGGTCGAGAGGAGCCAGCTGGA
TATCTCTGACCCATACAAGGTGTACAGGATTGTTCCAGAGGGAGCCAAAAAAGGAGCAAAGCAGCTCACT
TTGGATGACACACAGATGGCCATGGGCCACCCCTACCCCATGACAGCACCTTATGGCTCTCTGCCAGCCC
AGGTTCATAACTACATGATGCCACCCCATGACAGGAGCTGGAGGGATTATGCCCCTGACCAGTCACACCC
AGAAATCCCATATCAATGTCCTGTGACGTTTGGCCCACGAGGCCACCACTGGCAAGGCCCATCTTGTGAA
AATGGTTGCCAGGTGACAGGAACCTTTTATGCTTGTGCCCCACCTGAGTCCCAGGCTCCTGGAATCCCCA
TTGAGCCAAGCATAAGGTCTGCTGAAGCCTTGGCGCTCTCAGACTGCCGGCTGCATATCTGCCTGTATTA
CCGGGACATCCTCGTGAAAGAGCTGACCACGACGAGCCCTGAAGGCTGCCGGATCTCCCACGGACACACC
TATGATGTTAGCAACCTGGACCAGGTCCTGTTTCCCTACCCGGACGACAATGGACAGAGGAAGAACATTG
AGAAGTTGCTGAGCCACCTGGAGAGGGGACTGGTCCTCTGGATGGCTCCAGATGGGCTTTATGCCAAAAG
ACTCTGCCAGAGTAGGATCTACTGGGATGGGCCCCTGGCACTGTGCAGCGATCGGCCCAACAAGCTAGAA
AGAGACCAGACTTGCAAGCTCTTTGACACACAGCAGTTTCTATCAGAGCTGCAAGTGTTTGCTCACCATG
GCCGGCCAGCACCGAGATTCCAGGTGACTCTGTGCTTTGGTGAGGAGTTTCCAGACCCTCAGAGACAGAG
GAAGCTCATCACAGCTCATGTGGAACCTCTGCTAGCCAGACAACTGTATTACTTTGCTCAACAAAACACT
GGACATTTCCTGAGGGGCTACGAGTTACCTGAACACGTTACCACTCCAGATTACCACCGCTCCCTCCGTC
ATTCTTCCATCCAAGAGTGA

Translation (449 aa):
MNLETGSRGSEFGMSAVSCGNGKLRQWLIDQIDSGKYPGLVWENEEKSVFRIPWKHAGKQDYNREEDAAL
FKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKKGAKQLT
LDDTQMAMGHPYPMTAPYGSLPAQVHNYMMPPHDRSWRDYAPDQSHPEIPYQCPVTFGPRGHHWQGPSCE
NGCQVTGTFYACAPPESQAPGIPIEPSIRSAEALALSDCRLHICLYYRDILVKELTTTSPEGCRISHGHT
YDVSNLDQVLFPYPDDNGQRKNIEKLLSHLERGLVLWMAPDGLYAKRLCQSRIYWDGPLALCSDRPNKLE
RDQTCKLFDTQQFLSELQVFAHHGRPAPRFQVTLCFGEEFPDPQRQRKLITAHVEPLLARQLYYFAQQNT
GHFLRGYELPEHVTTPDYHRSLRHSSIQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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