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Report for CCDS22344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22344.1 Public Mus musculus 8 Slc18a1 23 108 98 CCDS HistoryNCBI Gene:110877Re-query CCDS DB by CCDS ID:22344.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037478.12 ENSMUSP00000046924.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037478.12Link to Ensembl Protein Viewer:ENSMUSP00000046924.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037478Re-query CCDS DB by Protein ID:ENSMUSP00000046924
Original member Current member NCBI NM_153054.2 NP_694694.1 Accepted alive Link to Nucleotide Sequence:NM_153054.2Link to Protein Sequence:NP_694694.1Re-query CCDS DB by Nucleotide ID:NM_153054Re-query CCDS DB by Protein ID:NP_694694Link to BLAST:NP_694694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694694.1 521 Q8R090 521 100% 0 0

Chromosomal Locations for CCDS 22344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69038795 69038905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69040241 69040374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69040582 69040701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69040978 69041041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69042714 69042765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69043925 69044003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69051280 69051375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69051453 69051513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69065294 69065337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69065556 69065645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69067140 69067232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69068144 69068227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69072063 69072121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69073556 69073910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69075034 69075157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGTTCCAGGTTGTTCTGGGTGCTCCTCAGCGACTGCTGAAGGAAGGGAGGCAGTCCCGGAAGCTGGTGT
TGGTGGTGGTGTTTGTGGCTCTACTCCTGGACAATATGCTGCTCACTGTGGTGGTGCCCATTGTGCCCAC
CTTCCTGTATGCGACAGAGTTCAAAGACATCAACTCTTCTCTGCTTAGGGGTCCTTCTGTAAGCTCCCAG
CAAGCTCTCACCTCTCCTGCCTTCTCTACCACCTTCTCCTTCTTTGACAACACCACCATGACTGTAGAAG
AACATGTACCTTTTCGTGTAGCATGGATAAATGGTACCATCCCTCCTCCAGTCACCGAAGCTGGCTCAGT
ACCTAAAAACAACTGCTTGCAAGGGATAGAGTTCTTGGAAGAAGAAAATGTCCGGATTGGGATTCTATTT
GCTTCAAAGGCTTTGATGCAACTTCTGGTTAACCCATTTGTAGGACCTCTTACTAACAGGATTGGCTATC
ACATCCCCATGTTTGTTGGCTTTATGATCATGTTTCTCTCCACACTAATGTTTGCTTTCTCTGGCACCTA
TGCCCTGCTGTTTGTGGCCCGAACTCTCCAAGGCATTGGATCTTCATTTTCATCTGTTGCAGGGCTTGGG
ATGCTGGCCAGTGTCTATACGGATAACTACGAGAGAGGAAGAGCCATGGGAATTGCTTTGGGGGGCCTGG
CTTTGGGACTTCTGGTGGGAGCACCTTTTGGAAGTGTGATGTATGAATTTGTGGGCAAGTCCTCACCATT
CCTCATCTTGGCCTTCCTGGCACTTCTGGATGGAGCTCTCCAGTTTTGCATCCTATGGCCTTCGAAAGTG
TCTCCTGAGAGTGCCATGGGGACTCCACTTTTGACACTTCTCAAAGATCCTTACATTCTGGTAGCAGCAG
GTTCCATCTGCCTGGCCAACATGGGAGTCGCCATATTAGAGCCCACGCTACCCATCTGGATGATGCAGAC
CATGTGTTCCCCGGAGTGGCAGCTAGGTCTGGCTTTTTTACCTGCCAGTGTGGCCTACCTCATTGGCACG
AACCTTTTTGGTGTGTTGGCCAACAAGATGGGTCGGTGGCTGTGCTCCCTTGTTGGAATGGTAGCTGTAG
GTATCAGCTTGCTCTGTGTACCTCTGGCTCACAATATTTTTGGTCTTATTGGACCCAATGCAGGCCTTGG
CTTTGCCATAGGCATGGTGGATTCCTCTCTGATGCCCATCATGGGATACCTGGTGGACTTACGCCATACC
TCTGTGTATGGGAGTGTCTATGCCATCGCTGATGTGGCTTTTTGTGTGGGCTTTGCTATTGGCCCATCTA
CCGGGGGTGTTATTGTACCGGTCATCGGCTTCCCTTGGCTCATGGTCATCATTGGAACTATCAACATCAT
CTATGCCCCTCTCTGCTGCTTCCTGCAGAACCCACCAGCTAAGGAGGAGGAGCTTGCAATTCTGAACCAG
GAATGCCCCACAGAGACCCAGATGTACACAATCCAGAGGCCCACGAAGGAGTTTCCACTGGGAGAGAACA
GCGATGATCCTGGCAGTGAGGAGTAG

Translation (521 aa):
MFQVVLGAPQRLLKEGRQSRKLVLVVVFVALLLDNMLLTVVVPIVPTFLYATEFKDINSSLLRGPSVSSQ
QALTSPAFSTTFSFFDNTTMTVEEHVPFRVAWINGTIPPPVTEAGSVPKNNCLQGIEFLEEENVRIGILF
ASKALMQLLVNPFVGPLTNRIGYHIPMFVGFMIMFLSTLMFAFSGTYALLFVARTLQGIGSSFSSVAGLG
MLASVYTDNYERGRAMGIALGGLALGLLVGAPFGSVMYEFVGKSSPFLILAFLALLDGALQFCILWPSKV
SPESAMGTPLLTLLKDPYILVAAGSICLANMGVAILEPTLPIWMMQTMCSPEWQLGLAFLPASVAYLIGT
NLFGVLANKMGRWLCSLVGMVAVGISLLCVPLAHNIFGLIGPNAGLGFAIGMVDSSLMPIMGYLVDLRHT
SVYGSVYAIADVAFCVGFAIGPSTGGVIVPVIGFPWLMVIIGTINIIYAPLCCFLQNPPAKEEELAILNQ
ECPTETQMYTIQRPTKEFPLGENSDDPGSEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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