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Report for CCDS28344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28344.1 Public Mus musculus 16 Chaf1b 23 108 98 CCDS HistoryNCBI Gene:110749Re-query CCDS DB by CCDS ID:28344.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023666.10 ENSMUSP00000023666.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023666.10Link to Ensembl Protein Viewer:ENSMUSP00000023666.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023666Re-query CCDS DB by Protein ID:ENSMUSP00000023666
Original member Current member EBI ENSMUST00000117099.7 ENSMUSP00000113684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117099.7Link to Ensembl Protein Viewer:ENSMUSP00000113684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117099Re-query CCDS DB by Protein ID:ENSMUSP00000113684
Original member NCBI NM_028083.4 NP_082359.1 Updated not alive Link to Nucleotide Sequence:NM_028083.4Link to Protein Sequence:NP_082359.1Re-query CCDS DB by Nucleotide ID:NM_028083Re-query CCDS DB by Protein ID:NP_082359
Current member NCBI NM_028083.5 NP_082359.1 Accepted alive Link to Nucleotide Sequence:NM_028083.5Link to Protein Sequence:NP_082359.1Re-query CCDS DB by Nucleotide ID:NM_028083Re-query CCDS DB by Protein ID:NP_082359Link to BLAST:NP_082359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082359.1 572 Q9D0N7 572 100% 0 0

Chromosomal Locations for CCDS 28344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 93884496 93884621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93885359 93885491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93887122 93887239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93888042 93888145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93891500 93891596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93892114 93892198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93892732 93892825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93894737 93894806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93894895 93894986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93900023 93900185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93900925 93901356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93905006 93905097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93905905 93906017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGAAAGTGATCACGTGTGAAATCGCCTGGCACAACAAGGAGCCAGTGTACAGCCTGGACTTCCAGCATG
GGGCAACCTGGAAGATCCACAGGCTGGCATCCGCGGGGGTGGACACCGCCGTCAGGATCTGGAAGTTGGA
GAGGGGGCCAGATGGGAAAGCCATTGTGGAATTTCTCTCCAATCTTGCTCGACACACCAAAGCTGTCAAT
GTTGTACGCTTTTCTCCAACTGGGGAGATTTTAGCATCTGGAGGAGATGATGCCGTCATTCTGTTGTGGA
AGATGAATGACAGCAAGGAGCCGGAGCAGATCGCCTTTCAGGATGAGGAGGAGGCGCAGCTGAATAAGGA
GAACTGGACTGTGGTAAAGACCCTGAGGGGCCACTTAGAAGATGTGTATGATATTTGCTGGGCAACCGAT
GGGAATTTGATGACCTCTGCCTCTGTGGATAACACAGTTATCATATGGGATGTCAGTAAAGGGCAGAAAA
TTTCCATTTTCAACGAGCATAAAAGTTATGTGCAAGGAGTCACCTGGGATCCTTTGGGTCAATATATTGC
GACCCTGAGCTGTGACAGGGTGCTGCGGATCTATAATACCCAGAAAAAGCGTGTGGCTTTCAACATTTCA
AAGATGCTCTCTGGACAGGGGCCTGAAGGAGAGGCAAGAAGTTTCCGGATGTTTCACGACGACAGCATGA
AGTCGTTCTTCCGAAGACTCAGCTTTACTCCAGATGGATCTTTGCTCCTCACTCCAGCCGGATGTATGGA
ATCTGGTGAGAATGTGACAAACACCACTTATGTGTTCTCCAGAAAACACCTGAAAAGGCCAATCGCCCAT
CTTCCGTGCCCTGGGAAAGCGACTCTTGCTGTCCGCTGTTGTCCTGTCTACTTTGAATTGAGGCCAGTGG
CAGAAACAGAGAAAGCATCAGAGGAGCCCAGCCCCGAGCTGGTGAACCTGCCCTACCGTATGGTGTTCGC
GGTGGCTTCCGAGGACTCTGTGTTGCTCTATGACACTCAACAGTCTTTCCCATTTGGCTATGTGTCTAAC
ATCCATTACCATACCCTGAGTGACATTTCCTGGTCCAGCGATGGGGCCTTCTTGGCCATTTCCTCCACGG
ATGGCTATTGCACATTTGTGACCTTCGAGAAAGGTGAACTTGGCATACCTTTGAAAGAGAAGCCAGTGCT
GAGCATAAGGACTCCCGACACAGCCAAGAAAGCCAAGAACCAGACACACCAGGGATCTTCGCCGGGATCC
AGATCAGTCGAAGGGACCCCCAGCAACAGAACCCAAGACCCCAGCAGTCCCTGTACCACTCCTTCACCAA
CCACACAGTCTCCAGCTCCGTCGGCCATCAAGGACAGTCCCTCAGCCATCCCGGCTGGCAAAAGCCCCTT
GCCACAACCTTCTGAAGAGAAGACCCTGCAACCTGCTGGGCAAAACATGAAAGCCCCCCAACCCCGCAGG
GTCACCCTGAACACGCTGCAGACTTGGGGCAAGACAGCCCCCCGGAGAATAAATTTAACACCATTGAAAA
CAGACACTGTGCCAAATCCACAGCCCAATAGCGGGACCGCCCCCTCCACAGAAGAGGTCCAGCCAGAGGC
TCCTGGGGAGCCACCGGAGGAGCCTCCTGAACTGAAGAGACCCAGGCTTGAGGAACGTGAAGGAGATGCC
CAAAACCTGGCCCCTGATGACTCTTCCAAGACTGTCTGA

Translation (572 aa):
MKVITCEIAWHNKEPVYSLDFQHGATWKIHRLASAGVDTAVRIWKLERGPDGKAIVEFLSNLARHTKAVN
VVRFSPTGEILASGGDDAVILLWKMNDSKEPEQIAFQDEEEAQLNKENWTVVKTLRGHLEDVYDICWATD
GNLMTSASVDNTVIIWDVSKGQKISIFNEHKSYVQGVTWDPLGQYIATLSCDRVLRIYNTQKKRVAFNIS
KMLSGQGPEGEARSFRMFHDDSMKSFFRRLSFTPDGSLLLTPAGCMESGENVTNTTYVFSRKHLKRPIAH
LPCPGKATLAVRCCPVYFELRPVAETEKASEEPSPELVNLPYRMVFAVASEDSVLLYDTQQSFPFGYVSN
IHYHTLSDISWSSDGAFLAISSTDGYCTFVTFEKGELGIPLKEKPVLSIRTPDTAKKAKNQTHQGSSPGS
RSVEGTPSNRTQDPSSPCTTPSPTTQSPAPSAIKDSPSAIPAGKSPLPQPSEEKTLQPAGQNMKAPQPRR
VTLNTLQTWGKTAPRRINLTPLKTDTVPNPQPNSGTAPSTEEVQPEAPGEPPEEPPELKRPRLEEREGDA
QNLAPDDSSKTV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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