NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57436.1 Public Mus musculus 6 Txnrd3 23 108 98 CCDS HistoryNCBI Gene:232223Re-query CCDS DB by CCDS ID:57436.1Re-query CCDS DB by GeneID:232223See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 57436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000828.12 ENSMUSP00000000828.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000828.12Link to Ensembl Protein Viewer:ENSMUSP00000000828.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000828Re-query CCDS DB by Protein ID:ENSMUSP00000000828
Original member NCBI NM_153162.3 NP_694802.2 Updated not alive Link to Nucleotide Sequence:NM_153162.3Link to Protein Sequence:NP_694802.2Re-query CCDS DB by Nucleotide ID:NM_153162Re-query CCDS DB by Protein ID:NP_694802
Current member NCBI NM_153162.4 NP_694802.2 Accepted alive Link to Nucleotide Sequence:NM_153162.4Link to Protein Sequence:NP_694802.2Re-query CCDS DB by Nucleotide ID:NM_153162Re-query CCDS DB by Protein ID:NP_694802Link to BLAST:NP_694802.2

Chromosomal Locations for CCDS 57436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 89644244 89644402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89650526 89650586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89651499 89651608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89654054 89654158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89654349 89654421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89656028 89656147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89661459 89661601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89663077 89663192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89664378 89664603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89665700 89665792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89669305 89669381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89669818 89669974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89672171 89672278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89672968 89673063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89674061 89674195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89674729 89674797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 614

Nucleotide Sequence (1848 nt):
ATGTCGTCGCCACCCGGCCGCCGCGCCCGCCTGGCCTCCCCTGGGACCAGCCGCCCGTCTTCTGAGGCCC
GCGAGGAGCTGCGGCGCCGCCTGCGGGACCTCATCGAGGGCAACAGGGTGATGATCTTCAGCAAGAGTTA
CTGTCCACACAGCACGCGGGTTAAGGAACTCTTTTCGTCCTTGGGAGTGGTCTATAACATCCTGGAACTT
GATCAAGTTGATGACGGGGCCAGTGTTCAGGAAGTGCTGACAGAAATCAGTAACCAGAAAACGGTGCCCA
ATATTTTTGTGAATAAAGTGCACGTGGGTGGATGTGACCGAACTTTCCAGGCACATCAGAATGGTTTACT
GCAGAAGCTCCTCCAAGATGACTCGGCTCATGATTACGACCTCATCATCATCGGCGGGGGTTCTGGCGGC
CTCTCTTGTGCCAAGGAAGCTGCCAACTTGGGAAAGAAGGTCATGGTGCTAGACTTTGTGGTCCCATCGC
CTCAGGGCACGACCTGGGGCCTTGGCGGCACCTGTGTGAACGTAGGCTGTATTCCAAAGAAGCTGATGCA
TCAGGCAGCCCTCCTGGGGCATGCTTTGCAAGATGCCAAGAAATATGGCTGGGAGTATAACCAGCAGGTG
AAGCACAACTGGGAGGCCATGACAGAAGCTATCCAGAGCCACATTGGCTCCTTGAACTGGGGCTACAGGG
TAACCCTTCGGGAGAAAGGCGTGACCTATGTCAACTCCTTCGGGGAGTTTGTGGACCTGCATAAAATAAA
GGCAACCAATAAGAAAGGGCAGGAAACGTTTTACACGGCTTCGAAGTTTGTCATAGCAACAGGTGAAAGG
CCTCGGTACTTGGGAATCCAGGGAGATAAAGAGTACTGTATTACGAGTGACGACCTGTTCTCTCTGCCAT
ACTGCCCGGGATGTACATTAGTCGTAGGCGCTTCTTATGTTGGTCTGGAGTGTGCGGGCTTTTTGGCTGG
TTTGGGGTTAGATGTGACAGTCATGGTACGCTCCGTCCTTCTTCGTGGCTTTGATCAAGAAATGGCAGAG
AAAGTGGGATCCTACCTGGAACAACAAGGTGTCAAGTTCCAAAGGAAATTCACCCCCATTTTGGTTCAAC
AGTTGGAGAAAGGTTTACCAGGAAAATTGAAAGTCGTGGCTAAGTCCACCGAAGGACCGGAAACAGTAGA
AGGGATATACAACACGGTTTTGTTAGCAATTGGTCGTGACTCCTGTACAAGGAAAATAGGGCTGGAGAAG
ATCGGGGTCAAAATCAATGAGAAGAATGGCAAAATACCAGTAAACGATGTGGAGCAGACCAACGTGCCTC
ATGTTTATGCTATTGGGGACATACTGGACGGCAAACCAGAGCTCACCCCCGTTGCCATACAGGCAGGCAA
GCTGCTAGCTCGAAGACTCTTTGGGGTCTCTTTAGAAAAGTGTGATTATATTAACATCCCAACAACGGTG
TTCACACCTCTGGAATATGGCTGTTGTGGACTGTCGGAAGAGAAAGCCATCGAAATGTATAAAAAAGAGA
ATCTGGAAGTGTATCACACCTTGTTTTGGCCTCTCGAGTGGACAGTTGCTGGCAGAGACAACAACACCTG
TTATGCAAAGATAATCTGCAACAAATTCGACAACGAACGTGTGGTGGGATTTCACCTTCTGGGGCCAAAT
GCTGGTGAAATCACGCAGGGATTTGCAGCTGCAATGAAATGTGGGCTCACGAAGCAGCTACTGGATGATA
CCATTGGAATCCACCCCACCTGTGGTGAGGTATTCACAACATTGGAAATCACAAAGTCCTCAGGGCTGGA
CATTACTCAGAAAGGCTGCTGAGGCTAG

Translation (615 aa):
MSSPPGRRARLASPGTSRPSSEAREELRRRLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILEL
DQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQDDSAHDYDLIIIGGGSGG
LSCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGHALQDAKKYGWEYNQQV
KHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGER
PRYLGIQGDKEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAE
KVGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEK
IGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLARRLFGVSLEKCDYINIPTTV
FTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPN
AGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCUG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH