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Report for CCDS37367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37367.1 Public Mus musculus 16 Col8a1 23 108 98 CCDS HistoryNCBI Gene:12837Re-query CCDS DB by CCDS ID:37367.1Re-query CCDS DB by GeneID:12837See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37367.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089332.4 ENSMUSP00000086745.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089332.4Link to Ensembl Protein Viewer:ENSMUSP00000086745.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089332Re-query CCDS DB by Protein ID:ENSMUSP00000086745
Original member Current member NCBI NM_007739.2 NP_031765.2 Accepted alive Link to Nucleotide Sequence:NM_007739.2Link to Protein Sequence:NP_031765.2Re-query CCDS DB by Nucleotide ID:NM_007739Re-query CCDS DB by Protein ID:NP_031765Link to BLAST:NP_031765.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031765.2 744 Q00780 744 100% 0 0

Chromosomal Locations for CCDS 37367.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 57626911 57628817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57632311 57632638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGGCTGTGCCACCCAGGCCTCTACAGCTGCTGGGAATACTGTTCATCATTTCCCTGAACTCTGTCAGAC
TCATTCAGGCCGGTGCCTACTATGGAATCAAGCCTCTGCCACCTCAAATCCCTCCTCAGATACCACCACA
AATTCCACAGTACCAGCCCTTGGGCCAGCAAGTCCCTCACATGCCTTTGGGCAAAGATGGCCTTTCCATG
GGCAAGGAGATGCCTCACATGCAGTATGGCAAAGAGTACCCACACCTACCCCAATATATGAAGGAAATCC
CACCTGTGCCAAGAATGGGCAAGGAAGTGGTGCCCAAAAAAGGCAAAGGAGAAGTACCGTTAGCCAGTTT
GCGCGGAGAACAAGGTCCCCGTGGAGAACCTGGACCAAGAGGACCACCTGGGCCGCCAGGTTTACCAGGT
CATGGAATGCCTGGAATCAAAGGAAAACCAGGGCCCCAGGGATATCCAGGAATTGGAAAGCCCGGTATGC
CTGGAATGCCTGGGAAGCCAGGAGCCATGGGAATGCCAGGGGCAAAAGGCGAAATTGGACCCAAAGGGGA
AATCGGACCTATGGGAATCCCAGGGCCACAAGGGCCTCCAGGACCTCATGGACTTCCTGGCATCGGGAAA
CCGGGTGGGCCAGGGTTACCAGGGCAACCAGGAGCAAAAGGTGAGAGGGGGCCCAAAGGACCACCAGGAC
CTCCCGGCCTTCAGGGTCCCAAAGGAGAGAAGGGCTTCGGGATGCCTGGCTTGCCAGGTCTGAAGGGTCC
TCCAGGTATGCATGGCCCTCCTGGACCAGTTGGACTACCGGGAGTAGGAAAACCAGGAGTGACAGGCTTT
CCTGGACCACAGGGTCCCCTGGGGAAGCCAGGGCCTCCAGGGGAACCTGGACCACAAGGCCTTATTGGTG
TGCCAGGAGTTCAAGGACCTCCTGGGATGCCTGGAGTTGGAAAGCCAGGTCAGGATGGGATCCCGGGCCA
ACCAGGATTTCCGGGTGGTAAAGGGGAACAAGGATTGCCAGGGTTGCCTGGACCCCCAGGCCTCCCAGGG
GTCGGAAAGCCAGGTTTCCCAGGACCCAAAGGGGACCGGGGTATTGGGGGTGTTCCTGGGGTTCTTGGGC
CGAGAGGGGAAAAAGGACCCATTGGTGCTCCTGGAATGGGGGGTCCACCTGGAGAGCCAGGCCTACCCGG
TATCCCGGGTCCCATGGGCCCTCCAGGTGCTATTGGTTTCCCTGGACCCAAAGGAGAAGGTGGAGTTGTA
GGACCACAGGGTCCACCAGGCCCCAAGGGAGAGCCTGGCCTCCAAGGCTTCCCTGGGAAGCCAGGTTTTC
TTGGTGAAGTAGGTCCCCCTGGCATGAGGGGTTTGCCTGGTCCTATAGGACCCAAGGGAGAAGGTGGTCA
CAAAGGGTTGCCAGGGCTTCCCGGTGTTCCAGGGCTGCTTGGACCCAAAGGAGAACCTGGCATACCTGGG
GATCAGGGTCTACAGGGTCCCCCAGGGATTCCAGGGATCGTAGGACCTAGTGGCCCTATTGGACCCCCTG
GGATTCCGGGCCCCAAAGGAGAACCAGGCCTCCCAGGGCCCCCTGGGTTCCCTGGTGTAGGGAAGCCAGG
AGTAGCAGGACTTCATGGGCCCCCGGGGAAACCTGGTGCCCTTGGGCCTCAAGGCCAGCCTGGCCTTCCT
GGACCCCCAGGTCCTCCAGGACCCCCAGGCCCTCCAGCTGTGATGCCTACACCATCACCCCAGGGAGAGT
ATCTGCCAGATATGGGACTAGGAATTGATGGGGTGAAACCTCCGCATGCCTATGCGGGCAAAAAGGGCAA
ACACGGAGGGCCAGCCTATGAGATGCCTGCGTTTACTGCCGAGCTGACTGTACCTTTCCCACCGGTGGGG
GCCCCAGTGAAGTTTGACAAGCTGCTCTACAACGGCAGACAGAACTACAATCCGCAGACAGGCATCTTCA
CCTGTGAAGTCCCGGGTGTCTACTACTTTGCTTATCATGTTCACTGCAAGGGAGGCAACGTATGGGTTGC
TCTCTTCAAGAACAACGAGCCCATGATGTACACATACGACGAGTACAAGAAGGGCTTTCTGGACCAAGCA
TCTGGAAGCGCAGTACTGCTTCTCCGTCCCGGAGACCAGGTGTTTCTCCAAATGCCTTCAGAACAGGCTG
CTGGACTCTATGCCGGGCAATATGTCCACTCCTCCTTTTCAGGATATTTATTGTATCCCATGTAA

Translation (744 aa):
MAVPPRPLQLLGILFIISLNSVRLIQAGAYYGIKPLPPQIPPQIPPQIPQYQPLGQQVPHMPLGKDGLSM
GKEMPHMQYGKEYPHLPQYMKEIPPVPRMGKEVVPKKGKGEVPLASLRGEQGPRGEPGPRGPPGPPGLPG
HGMPGIKGKPGPQGYPGIGKPGMPGMPGKPGAMGMPGAKGEIGPKGEIGPMGIPGPQGPPGPHGLPGIGK
PGGPGLPGQPGAKGERGPKGPPGPPGLQGPKGEKGFGMPGLPGLKGPPGMHGPPGPVGLPGVGKPGVTGF
PGPQGPLGKPGPPGEPGPQGLIGVPGVQGPPGMPGVGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPG
VGKPGFPGPKGDRGIGGVPGVLGPRGEKGPIGAPGMGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGVV
GPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEGGHKGLPGLPGVPGLLGPKGEPGIPG
DQGLQGPPGIPGIVGPSGPIGPPGIPGPKGEPGLPGPPGFPGVGKPGVAGLHGPPGKPGALGPQGQPGLP
GPPGPPGPPGPPAVMPTPSPQGEYLPDMGLGIDGVKPPHAYAGKKGKHGGPAYEMPAFTAELTVPFPPVG
APVKFDKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQA
SGSAVLLLRPGDQVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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