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Report for CCDS16316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16316.1 Public Mus musculus 2 Or5d16 23 108 98 CCDS HistoryNCBI Gene:258636Re-query CCDS DB by CCDS ID:16316.1Re-query CCDS DB by GeneID:258636See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099843.1 ENSMUSP00000097431.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099843.1Link to Ensembl Protein Viewer:ENSMUSP00000097431.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099843Re-query CCDS DB by Protein ID:ENSMUSP00000097431
Original member Current member EBI ENSMUST00000215903.1 ENSMUSP00000149428.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215903.1Link to Ensembl Protein Viewer:ENSMUSP00000149428.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215903Re-query CCDS DB by Protein ID:ENSMUSP00000149428
Original member Current member EBI ENSMUST00000214641.1 ENSMUSP00000151048.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214641.1Link to Ensembl Protein Viewer:ENSMUSP00000151048.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214641Re-query CCDS DB by Protein ID:ENSMUSP00000151048
Original member Current member NCBI NM_146643.2 NP_666854.1 Accepted alive Link to Nucleotide Sequence:NM_146643.2Link to Protein Sequence:NP_666854.1Re-query CCDS DB by Nucleotide ID:NM_146643Re-query CCDS DB by Protein ID:NP_666854Link to BLAST:NP_666854.1

Chromosomal Locations for CCDS 16316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87942682 87943626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGATTCTGACAGACATAAATCTAACTTCTGAGGTCACATTCGCTCTCTTGGGCTTCTCAGATTACCCAG
AACTGCAGGTTCCCCTCTTCTTGTTGTTTCTGGCAATCTACAGCTTCAGTGTGGTGGGGAACATAGGGAT
GATGATAATCATCAAGATTAACCCCAAACTGCACACCCCCATGTACTTCTTCCTCAGCCACCTTTCCTTT
GCAGATTTCTGCTATTCCTCCATCATTGCTCCCAAGATGCTGGTGAACCTTGTTGTAGAAGATAGGACCA
TTTCATTTTTAGGATGTATAATGCAGTTCTTTTTCTTTTGCACATTTGTAGTGACTGAACTAATTCTATT
TGCTGTGATGGCCTATGACCGCTTTGTGGCTGTCTGTAACCCCCTGCTGTACACAGTAGTCATGTCACAG
AGGCTCTGTGCACTGCTAGTGCTTGGATCATATGCATGGGGGGTGGTGTGCTCCCTGACACTCACCTGTT
CTGCCCTAAATTTATATTTTCGGGGTTTCAACACAATCAATCACTTCTTCTGTGAACTGTCATCCCTAAT
AGCCCTCTCTTGCTCTGATTCTCATCTTACCCAGTTACTGCTTTTTATTGTTGCCACTTTCAATGAAATA
AGCACACTGCTCATCATTCTTACATCGTATTTGTTCATTGTTGTCACTGCCCTGAAAATGCATTCATCTA
GTGGACACCGAAAAGTCTTTTCTACCTGTGCTTCCCATATGACAGCCATCACTATCTTCCATGGAACCAT
ATTATTTCTCTACTGTGTGCCCAACTCCAAGAACTCCAGGCACACCGTCAAAGTGGCTTCTTTGTTTTAC
ACAGTTGTGATCCCCATGCTAAACCCCTTGATCTACAGTCTGAGAAATAAAGATGTCAAAGACACAGTCA
GTAAATTAATGAATGTGAGAAAATTTTCTCAGTGA

Translation (314 aa):
MILTDINLTSEVTFALLGFSDYPELQVPLFLLFLAIYSFSVVGNIGMMIIIKINPKLHTPMYFFLSHLSF
ADFCYSSIIAPKMLVNLVVEDRTISFLGCIMQFFFFCTFVVTELILFAVMAYDRFVAVCNPLLYTVVMSQ
RLCALLVLGSYAWGVVCSLTLTCSALNLYFRGFNTINHFFCELSSLIALSCSDSHLTQLLLFIVATFNEI
STLLIILTSYLFIVVTALKMHSSSGHRKVFSTCASHMTAITIFHGTILFLYCVPNSKNSRHTVKVASLFY
TVVIPMLNPLIYSLRNKDVKDTVSKLMNVRKFSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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