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Report for CCDS38626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38626.1 Public Mus musculus 3 Larp7 23 108 98 CCDS HistoryNCBI Gene:28036Re-query CCDS DB by CCDS ID:38626.1Re-query CCDS DB by GeneID:28036See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029588.9 ENSMUSP00000029588.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029588.9Link to Ensembl Protein Viewer:ENSMUSP00000029588.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029588Re-query CCDS DB by Protein ID:ENSMUSP00000029588
Original member Current member NCBI NM_138593.2 NP_613059.2 Accepted alive Link to Nucleotide Sequence:NM_138593.2Link to Protein Sequence:NP_613059.2Re-query CCDS DB by Nucleotide ID:NM_138593Re-query CCDS DB by Protein ID:NP_613059Link to BLAST:NP_613059.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613059.2 570 Q05CL8-1 570 100% 0 0

Chromosomal Locations for CCDS 38626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 127536954 127537034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127540545 127540636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127540799 127540958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127543032 127543156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127544154 127544278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127545826 127545970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127546047 127546403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127546476 127546569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127546654 127546818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127546921 127547004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127547090 127547190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127547362 127547545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGAAACTGAAAACCAAAAAACTATGGAAGAAAGCACTAAGAGAAAAGAAGAAAAAAAGAAGCGCTCCC
GGGTTAAACAGGTGCTTGCAGATATTGCTAAGCAGGTGGACTTCTGGTTTGGAGATGCAAACCTTCACAA
GGACAAGTTTCTGCGAGAGCAAATTGAAAAGTCTAGAGATGGATATGTGGACATTTCTCTCCTGGTGTCT
TTTAACAAAATGAAGAAGCTGACAACTGATGGGAAGCTAATAGCCAGAGCATTGAAAAGCTCATCTGTTG
TAGAGTTGGACTTAGAAGGGACCAGAATCAGGAGGAAAAAACCCCTAGGTGAGAGACCAAAGGACGAGGA
GGAACGCACGGTATATGTGGAGTTGCTCCCCAAAAATGTTACTCATAGCTGGATTGAGAGAGTATTTGGG
AAATGTGGCAATGTGGTTTACATAAGTATTCCACATTACAAGTCTACTGGGGATCCTAAGGGATTTGCCT
TTGTGGAATTTGAAACAAAAGAGCAAGCAGCAAAAGCCATTGAGTTTCTGAACAACCCACCAGAAGAAGC
ACCTAGAAAGCCTGGTATATTTCCCAAGACAGTGAAAAACAAGCCCATCCCTTCCTTACGAGTAGCAGAA
GAGAAGAAAAAGAAGAAAAAGAAAAAAGGCAGAATAAAGAAGGAAGAGAGTGTGCAGGCCAAAGAGTCGG
CCGTGGACAGCAGCAGCTCGGGCGTGTGTAAAGCCACGAAGAGACCAAGGACGGCCTCTGAGGGCTCCGA
AGCAGAAACCCCGGAAGCTCCAAAGCAACCTGCAAAGAAAAAGAAGAAGCGGGACAAGGTGGAAGCATCC
AGCTTACCTGAAGCCAGGGCAGGGAAGAGGGAGAGGTGCAGCGCCGAGGACGAAGACTGCCTCCCCCCAA
GGCCAAAAGCTAAGAAAAGGGCTCAGAAGGATGGCGTCGGCCAAGCAGCTTCCGAGGTCTCCAAGGAGAG
CAGAGACTTAGAATTCTGCTCTACTGAGGAGGAGAAGGAGACAGACAGAAAAGGTGACTCACTCTCAAAG
GTGAAGAGGAAGCATAAGAAGAAACACAAGGAGAGACATAAGATGGGCGAGGAGGTTATACCATTGAGAG
TGCTGTCCAAGACTGAATGGATGGATTTGAAGAAAGAGTATTTGGCACTGCAAAAAGCTAGCATGGCTTC
TCTAAAAAAAACAATATCTCAAATCAAATTGGAATCAGAAATGGAAACAGACTGTAAAGCGCCTACAGCA
GGCAGTGGTCAAGAGTGTTCCACCCAGGAGAAGGTCAGTGCACAAGGCCCACAGTTTGTGACTGGAGTGA
TTGTGAAGATTGTGAGCGGAGAGCCTCTACCGGGCAGGAAACAAGTCAAGGATATTTTGGCCACAATCTC
AGAAGTTGTTTACATTGATTTGCTAGAAGGAGATACTGAATGCCATGCCCGATTTAAAACCCCCGAGGAT
GCTCAGGCAGTAATGAATGCACAGACTGAAATTAGAAAGAAGCACAGTTGGAACCTCGAGGTCCTTTCTG
GGGATCATGAGCAGAGGTACTGGCAGAAGATTTTGGTAGATAGACAGGCCAAACTTAATCAACCTCGGGA
AAAGAAAAGAGGCACAGAAAAGCTAATCACCAAAGCTGAGAAGATTAGACTGGCTAAGACTCAGCAAGCC
AGTCAGCACATCCGTTTCTCTGAGTATGACTGA

Translation (570 aa):
METENQKTMEESTKRKEEKKKRSRVKQVLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVS
FNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDEEERTVYVELLPKNVTHSWIERVFG
KCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIPSLRVAE
EKKKKKKKKGRIKKEESVQAKESAVDSSSSGVCKATKRPRTASEGSEAETPEAPKQPAKKKKKRDKVEAS
SLPEARAGKRERCSAEDEDCLPPRPKAKKRAQKDGVGQAASEVSKESRDLEFCSTEEEKETDRKGDSLSK
VKRKHKKKHKERHKMGEEVIPLRVLSKTEWMDLKKEYLALQKASMASLKKTISQIKLESEMETDCKAPTA
GSGQECSTQEKVSAQGPQFVTGVIVKIVSGEPLPGRKQVKDILATISEVVYIDLLEGDTECHARFKTPED
AQAVMNAQTEIRKKHSWNLEVLSGDHEQRYWQKILVDRQAKLNQPREKKRGTEKLITKAEKIRLAKTQQA
SQHIRFSEYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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