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Report for CCDS36758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36758.1 Public Mus musculus 13 Arhgef28 23 108 98 CCDS HistoryNCBI Gene:110596Re-query CCDS DB by CCDS ID:36758.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109426.2 ENSMUSP00000105053.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109426.2Link to Ensembl Protein Viewer:ENSMUSP00000105053.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109426Re-query CCDS DB by Protein ID:ENSMUSP00000105053
Original member NCBI NM_012026.2 NP_036156.2 Updated not alive Link to Nucleotide Sequence:NM_012026.2Link to Protein Sequence:NP_036156.2Re-query CCDS DB by Nucleotide ID:NM_012026Re-query CCDS DB by Protein ID:NP_036156
Current member NCBI NM_012026.3 NP_036156.2 Accepted alive Link to Nucleotide Sequence:NM_012026.3Link to Protein Sequence:NP_036156.2Re-query CCDS DB by Nucleotide ID:NM_012026Re-query CCDS DB by Protein ID:NP_036156Link to BLAST:NP_036156.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036156.2 1700 P97433-1 1700 100% 0 0

Chromosomal Locations for CCDS 36758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 97899647 97899816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97929411 97929705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97930778 97931263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97936675 97936722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97936823 97936861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97939460 97939560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97942453 97942584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97944516 97944698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97945649 97945740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97946803 97946981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97951569 97951645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97953709 97953963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97956526 97956643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97957707 97957829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97961300 97961547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97965408 97965548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97967087 97967208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97967288 97967432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97969281 97969329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97970315 97970370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97978031 97978163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97978430 97978553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97981372 97981414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97985311 97985422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97988141 97988345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97993902 97994182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97996812 97996933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98029377 98029437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98029876 98029931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98043800 98043866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98050946 98051126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98053791 98053974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98074999 98075292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98077173 98077320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98145552 98145584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5103 nt):
ATGGAGTTGAGCTGCAGTGAAGTGCCTCTTTATGGACAGAAGACGGTCTATGCAAAGTTTGGCAAAAACG
TGTATCTACCCGAAGATGCGGAGTTTTACTTTGTTTATGGCGGGTCGCATCAGAGGCACGTGGTGATTGC
TGACCGTGTCCAGGACAATGTCCTCCAATCTAGCATTCCAGGCCACTGGCTTCAGGAGACGGTGACGGTA
TCTGTGTGCCTCTGCTCGGAAGGGTACTCCCCAGTGACCATGGGCTCTGGCTCAGTGACCTACGTGGACA
ACATGGCCTGCAGGCTGGCTCGTCTGCTGGTCACTCAGGCTGACCGACTCACGGCCTGCAGTCACCAGAC
GCTGCTGACCCCGTTTGCCCTGACAGTGGAAGCGCTGCCTGCCTTGGATGAGGAGCTCGTGCTGGCTCTG
ACCCAACTGGAGCTGCCTTTGGGTTGGACAGTCCTGGGAAATTCCTCACTTGAAGTATCTCTACACAGAG
AGTCTCTCCTGCATCTGGCTGTGAGATGGGCCCTCCCTAAGCTATTCCACTTCCTCTTGTGTCTCCCTGG
AGGAGTCAAGGCCTTGAAGCTACCTAATGAAGAGGCCACCACACCATTAGACTTAGCTTTGCAAGGTGGA
CACTCCACACTGGTAGAAGACATCACAAATTTTCAGGGTAGCCATTCCCCAGGCTTCTCCCGACTGCGTC
TTAACGAAGAGGCCACTCTGCAGTTTGTTCATTCATCGGAAACATTGACCCTGACCGTTAACCACACAGC
TGAGCATCTCTTGGAAGCAGACATCAAACTCTTCCGGAAATATTTCTGGGACAGAGCCTTTCTTGTCAAG
GCTCTTGAGCAAGAAGCCAAGACTGAGAAAGCAACCATGCCTTCTGGAGCTGCAGAAACTGAAGAAGAGG
TTAGGAATTTGGAGTCTGGCAGATCACCATCGGAGGAGGAGGAGGATGCAAAGAGCATCAAAAGCCAGGT
GGATGGGCCGAGTGAACACGAAGACCAGGACCGCCTACCTCTGGATCGCTCCTTTGATGGCCTCAAAAAA
TCCAAGCATGTCCCAGCGTCCCTTGCTGCAGGCCAGCTCTCTGATGTTCTGAACGGGGGTGATGAAGTCT
ACGCTAACTGTATGGTGATTGACCAGGTTGGCGATTTGGATATCAACTATATAAACCTAGAGGGACTCTC
CACCCATACGAGTCCCGAGTCTGGGAGGTCCATGCTGGGGCCTCAGGCTTGCATGCACACCCTTCCTCCC
GACACCAGTCCCTGCGGGCGCCCACTCATTGAGAACAGTGAGGGGACCCTGGATGCTGCAGCTTCGCAGT
CTTTCGTGACACCATCCAGTTCTCGCACTTCCAACTTGAACCTTTCTTTTGGTCTCCATGGATTTGAAAA
GGAGCAGAGTCATCTCAAGAAAAGGAGTTCTAGCCTGGATGCCCTGGTTGCCGACAGTGAGGGGGAAGGA
GGTTCTGAGCCCCCCATCTGCTATGCTGTGGGCTCTCAGAGTTCCCCAAGAACTGGACTCCCCAGCGGGG
ATGAACTGGACTCTTTTGAGACCAACACTGAACCAGACTGTAATATCTCCAGGACCGAATCACTCTCTCT
GTCCAGTACTCTGCATTCAAAGGAGTCCTTGCTTTCTGGGATCCGGTCTCGCTCCTACTCCTGCTCATCA
CCCAAAATCTCTTCAGGAAAATCCCGGCTAGTGCGCGACTTCACAGTGTGCAGTACCAGCGAAGAACAGA
GATCATATAGTTTCCAGGAGCCACCAGGAGAAAAAAGGATTCAGGAAGAAGAATGGGATGAATACGTCAT
TCCTGCCAAATCCGAGTCTGAAAAGTACAAAGTGAGCCGAACTTTCAGCTTCCTCATGAACAGGATGACC
AGCCCACGGAACAAATCTAAGATGAAAAACAAGGACACTAAAGAAAAAGAAAAAATGAATCGACATCAGT
TTGTCCCGGGAACGTTCTCCGGGGTTCTGCAGTGCTCCGGTTGTGATAAAACACTCCTGGGGAAAGAGTC
ACTCCAGTGTGCCAACTGTAAGGCAAACACACACAAGGGCTGCAAAGATGCTGTGCCTCCGTGTACCAAG
AAATTCCAAGAGAAATACAACAAGAACAAACCACAGAGCATCCTTGGAAGCTCTTCAGTCAGAGACGTCC
CAGCACCTGGGCTCTCCTTGCACCCTTCTTCCTCTATGCCCATCGGACTGCCAGCTGGAAGGAAGGAATT
TGCGGCTCAGGTGCATCCACTGTCCAGAAGTGTCCCCGGCACCACTTTGGAAAGCTTCAGGAGGGCAGTG
ACATCGTTAGAGTCTGAGGGTGACAGCTGGAGAAGCAGGTCTCATTCCGATGAGCTGTTCCAGTCTATGG
GCTCTTCTCCTTCCACGGAGTCATTCATGATGGAAGATGTTGTGGATTCTTCTCTGTGGATCGACCTCAG
TAGTGATGCTCAGGAGTTTGAAGCAGAGTCTTGGAGTCTCGTGGTGGACCCTTCCTTTTGCAGTAGGCAG
GAGAAGGATGTCATCAAAAGACAAGATGTCATTTTTGAGCTGATGCAGACAGAGGTCCACCACATCCAGA
CTCTGCTCATCATGTCCGAGGTCTTCAGGAAAGGCATGAAGGAGGAACTGCAGCTGGACCACAGCACGGT
GGACAAGATCTTCCCCTGCTTAGATGAGCTGCTGGAGACTCACCGGCACTTCTTCTTCAGCATGAAGGAG
CGCAGGCAGGAGTCCTGCGCTGGCAGTGACAGGAACTTTGTGATCAACCAAATTGGAGACATTCTGGTAC
AACAGTTTTCAGAGGAAAATGCAAGCAAAATGAAGAGGATCTATGGAGAATTCTGCAGCCATCACAAAGA
AGCCATGAGTCTCTTTAAAGAGCTGCAGCAGAACAAGAAGTTTCAGAATTTTATTAAGATCCGAAATAGC
AACCTGTTGGCTCGTCGCCGCGGAATCCCGGAGTGCATCCTGCTAGTTACCCAGCGCATCACAAAGTACC
CAGTCTTGGTGGAAAGGATCCTGCAGTACACCAAGGAAAGGACTGAAGAGCACCGGGACCTGTGCAAAGC
TCTCGGCTTAATTAAAGACATGATCGCAGCCGTGGACCTGAAAGTCAGCGAATACGAGAAGAACCAAAAA
TGGCTCGAGATCCTAAATAAAATCGAGAACAAAACATACACAAAGCTCAAAAATGGCCACGTGTTTAGAA
AGCAGGCGCTGCTGAGCCAGGAACGGGCTCTCCTGCATGATGGGCTTGTCTACTGGAAAACCGCTACGGG
TCGCTTCAAAGACATCCTGGCTCTGCTACTAACTGACGTGCTGCTCTTCTTACAAGAAAAAGACCAGAAA
TACATCTTTGCAGCTGTTGACCAGAAGCCATCAGTGATTTCCCTCCAGAAGCTGATTGCTAGAGAAGTTG
CCAACGAGGAGAGAGGCATGTTTCTGATCAGTGCTTCGTCAGCCGGCCCCGAGATGTACGAAATCCACAC
CAATTCCAAGGAGGAGCGGAATAACTGGATGAGGCGGATCCAGCAGGCAGTAGAAAGTTGTCCAGAGGAA
GAAGGAGGAAGGACGAGCGAGTCGGATGAAGAGAGGCGGAAAGCTGAAGCTAGAGTGGCCAAGATTCAGC
AATGTCAAGAAATACTCAGTAACCAAGACCAACAGATTTGCACGTACTTGGAAGAAAAGCTGCATATCTA
CGCTGAACTTGGGGAACTGAGTGGCTTTGAGGATGTCCACCTAGAACCCCATCTGCTCATCAAACCTGAC
CCTGGAGAGCCTCCCCAGGCAGCGTCCCTGCTTGCAGCAGCCCTGAGAGAAGCCGAGAGTCTGCAAGTGG
CTGTGAAGGCTTCAAAGATGGGCGATGTAAGCCAGTCATCCGAAGAAAGCCCTGGAGGGACTGTCCTGAT
GGACACACCCAGTACACAGGATGTACCAGCGTCACCAACTGCTTCATTAGTCACAGAAGGGACAGAAGGA
AGAGGCTGTTGGGATGTGGATCCCGGGCTCCAGGGTGTGGTAACCGACTTGGCAGTCTCTGATGCAGGGG
AGAAGGTGGAATATAGAAGTTTCTCCGGTTCTTCACAGTCAGAGATTATACAAGCAATACAGAATTTAAC
GCGTCTCCTCTACAGCCTTCAGGCTGCCTTGACCATCCAGGACAGTCACATTGAGATCCACAAACTGGTT
CTACAGCAGCGGGAGAGCTTGGCCCCTAGCCACTCCTTCCGAGGTGGCCCCTTGCAAGACCAGGAGAAAT
CCCGCTACCTGGAAAAGCAGCGTGAAGAGCTGGCCAACATCCACAAGCTTCAACACCAGTTCCAGCAGGA
GCAGCGGCGCTGGCACCGCACGTGCGACCAGCAACAGCGCGAGCAGGAAGCCCAAGAGAGCTGGCTGCAG
GCGCGGGAACGTGAGTGCCAGTCCCAGGAGGAATTGTTGCTGCGCCACCGTAGCGAGCTGGACCACCAAC
TCCAGGAGTACCAGCAGAGCCTTGAGCGGCTACGGGAGGGCCAGCGGATGGTGGAGAGGGAGAGACAGAA
GATGCGTGTCCAGCAGGGTCTGCTGGGCCACTGCAAGCATAGTCGCCAGCGGAGCCTCCCAGCCGTCTTC
TCTCCAGGGAGCAAGGAGGTAACAGAACTTAACCGAGCTGAGAGTTTGTGTCATGAAAATTCATTTTTCA
TCAATGAAGCTTTTGGACACATGTCACTTAACACGTCCAATAAACCAAACCCATCAGGGGTCCCCTGGGA
TGCTCACCCCCTGGAGGGGTCTCATTTTGATTTGGCAAGGACTAGTGAGAGTCCAACAGAACTGAAGATA
GACATTTCTCAGCCTCCTGATGTCAACTCTGAACTCTGGACAACGGGGCCGGGCCATCAGAGACCTGCTC
TCCAAGAAAACAGCAAGGAGTCTTATAAAAATGTTGCAGATTTGGACTCCTTCCAGAGTGAATCGTCATC
TCCCCAGGACTCCAATCAGCGTGGCCCCCAGCCACAGACACTCACAACAGAAGCAAAACTAAGTCTTCCG
ATGGCGGCTGGACACGGTGGCGATGCTGGAGACGGGGCTGAAGAAAACATTCTTTACCTCTGA

Translation (1700 aa):
MELSCSEVPLYGQKTVYAKFGKNVYLPEDAEFYFVYGGSHQRHVVIADRVQDNVLQSSIPGHWLQETVTV
SVCLCSEGYSPVTMGSGSVTYVDNMACRLARLLVTQADRLTACSHQTLLTPFALTVEALPALDEELVLAL
TQLELPLGWTVLGNSSLEVSLHRESLLHLAVRWALPKLFHFLLCLPGGVKALKLPNEEATTPLDLALQGG
HSTLVEDITNFQGSHSPGFSRLRLNEEATLQFVHSSETLTLTVNHTAEHLLEADIKLFRKYFWDRAFLVK
ALEQEAKTEKATMPSGAAETEEEVRNLESGRSPSEEEEDAKSIKSQVDGPSEHEDQDRLPLDRSFDGLKK
SKHVPASLAAGQLSDVLNGGDEVYANCMVIDQVGDLDINYINLEGLSTHTSPESGRSMLGPQACMHTLPP
DTSPCGRPLIENSEGTLDAAASQSFVTPSSSRTSNLNLSFGLHGFEKEQSHLKKRSSSLDALVADSEGEG
GSEPPICYAVGSQSSPRTGLPSGDELDSFETNTEPDCNISRTESLSLSSTLHSKESLLSGIRSRSYSCSS
PKISSGKSRLVRDFTVCSTSEEQRSYSFQEPPGEKRIQEEEWDEYVIPAKSESEKYKVSRTFSFLMNRMT
SPRNKSKMKNKDTKEKEKMNRHQFVPGTFSGVLQCSGCDKTLLGKESLQCANCKANTHKGCKDAVPPCTK
KFQEKYNKNKPQSILGSSSVRDVPAPGLSLHPSSSMPIGLPAGRKEFAAQVHPLSRSVPGTTLESFRRAV
TSLESEGDSWRSRSHSDELFQSMGSSPSTESFMMEDVVDSSLWIDLSSDAQEFEAESWSLVVDPSFCSRQ
EKDVIKRQDVIFELMQTEVHHIQTLLIMSEVFRKGMKEELQLDHSTVDKIFPCLDELLETHRHFFFSMKE
RRQESCAGSDRNFVINQIGDILVQQFSEENASKMKRIYGEFCSHHKEAMSLFKELQQNKKFQNFIKIRNS
NLLARRRGIPECILLVTQRITKYPVLVERILQYTKERTEEHRDLCKALGLIKDMIAAVDLKVSEYEKNQK
WLEILNKIENKTYTKLKNGHVFRKQALLSQERALLHDGLVYWKTATGRFKDILALLLTDVLLFLQEKDQK
YIFAAVDQKPSVISLQKLIAREVANEERGMFLISASSAGPEMYEIHTNSKEERNNWMRRIQQAVESCPEE
EGGRTSESDEERRKAEARVAKIQQCQEILSNQDQQICTYLEEKLHIYAELGELSGFEDVHLEPHLLIKPD
PGEPPQAASLLAAALREAESLQVAVKASKMGDVSQSSEESPGGTVLMDTPSTQDVPASPTASLVTEGTEG
RGCWDVDPGLQGVVTDLAVSDAGEKVEYRSFSGSSQSEIIQAIQNLTRLLYSLQAALTIQDSHIEIHKLV
LQQRESLAPSHSFRGGPLQDQEKSRYLEKQREELANIHKLQHQFQQEQRRWHRTCDQQQREQEAQESWLQ
ARERECQSQEELLLRHRSELDHQLQEYQQSLERLREGQRMVERERQKMRVQQGLLGHCKHSRQRSLPAVF
SPGSKEVTELNRAESLCHENSFFINEAFGHMSLNTSNKPNPSGVPWDAHPLEGSHFDLARTSESPTELKI
DISQPPDVNSELWTTGPGHQRPALQENSKESYKNVADLDSFQSESSSPQDSNQRGPQPQTLTTEAKLSLP
MAAGHGGDAGDGAEENILYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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