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Report for CCDS40130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40130.1 Public Mus musculus 7 Gdpd3 23 108 98 CCDS HistoryNCBI Gene:68616Re-query CCDS DB by CCDS ID:40130.1Re-query CCDS DB by GeneID:68616See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40130.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032944.8 ENSMUSP00000032944.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032944.8Link to Ensembl Protein Viewer:ENSMUSP00000032944.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032944Re-query CCDS DB by Protein ID:ENSMUSP00000032944
Original member Current member NCBI NM_024228.2 NP_077190.2 Accepted alive Link to Nucleotide Sequence:NM_024228.2Link to Protein Sequence:NP_077190.2Re-query CCDS DB by Nucleotide ID:NM_024228Re-query CCDS DB by Protein ID:NP_077190Link to BLAST:NP_077190.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077190.2 330 Q99LY2 330 100% 0 0

Chromosomal Locations for CCDS 40130.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126766471 126766609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126766902 126766944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126767175 126767310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126767391 126767436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126767567 126767685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126767763 126767852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126768570 126768703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126770988 126771047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126771162 126771213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126775454 126775627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGATCCCTCTCCTGTACTTTGTTCTGCCCACCCTGGGCAGTTACGTCATGCTCTCCATCTTCTTCCTGC
GC
CGACCTCATCTGCTGCACACGCCGCGGGCTCCCGTCTTCCCTATCCGCCTGGCTGCCCACCGTGGAGG
G
TCTGGGGAGCGACTGGAGAACACCATGGAAGCAGTAGAGAATTCCATGGCCCAGCGAGCAGATCTCTTG
GAA
TTTGACTGCCAGCTCACCCGGGATGGCGTGGTGGTAGTGTCACACGACAAGAACCTGTCCCGCCAGT
CA
GGCCTAAATAAGGATGTGAACACCCTGGACTTTGAGGAGCTGCCCCTCTACAAGGAAGAGTTGGAAAT
T
TACTTCTCACCAGGCCATTTTGCCCACGGGTCAGACCGGCACATGATTAGTTTGGAGGATGTATTCCAG
AAA
TTTCCAAGGACTCCCATGTGCTTGGAGGTCAAAGAAAGAAATGAAGAACTCATTCACAAGGTAGCCA
AC
CTGACTAGGCGCTTTGACCGGAATGAGATTACTATTTGGGCTGCAGAGAAAAGCTCAGTCATGAAGAG
A
TGCAGGGCTGCTAACCCCGAGATGCCCATGGCCTTCACGATATGGCGATCGTTCTGGATACTGCTGCTC
TAC
TACCTGGGGCTGCTCCCTTTTGTCTCCATCCCTGAGAAGTTTTTCTTCTGTTTCCTGCCCACCATCA
TC
AACAGGACTTACTTCCCATTTCGCTGTGGATGGATGAACCAACTGTCGGCTACCATTACAAAATGGAT
C
ATCATGAGAAAAAGTCTGATCCGACACTTGCAGGACCGAGGGGTGCAGGTGCTATTTTGGTGCCTTAAT
GAA
GAATCGGATTTTGAAGTGGCCTTCAGCTTGGGAGCCAATGGCGTCATGACCGATTACCCCACAGCCC
TG
AGACACTACCTGGACAAGCAGGAAGAAGAGACCCAGCCTCCTCAGCCTGAGGCCCTGTCCTGTCTTTC
T
CTTAAAAAATAA


Translation (330 aa):
MIPLLYFVLPTLGSYVMLSIFFLRRPHLLHTPRAPVFPIRLAAHRGGSGERLENTMEAVENSMAQRADLL
E
FDCQLTRDGVVVVSHDKNLSRQSGLNKDVNTLDFE
ELPLYKEELEIYFSPGHFAHGSDRHMISLEDVFQ
K
FPRTPMCLEVKERNEELIHK
VANLTRRFDRNEITIWAAEKSSVMKRCRAANPEMPMAFTIWRSFWILLL
Y
YLGLLPFVSIPEKFFFCFLPTIIN
RTYFPFRCGWMNQLSATITKWIIMRKSLIRHLQDRGVQVLFWCLN
E
ESDFEVAFSLGANGVMTDYPTALRHYLDKQEEETQPPQPEALSCLSLKK




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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