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Report for CCDS74940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74940.1 Public Homo sapiens 3 SLC38A3 24 110 108 CCDS HistoryNCBI Gene:10991Re-query CCDS DB by CCDS ID:74940.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614032.5 ENSP00000481301.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614032.5Link to Ensembl Protein Viewer:ENSP00000481301.1Re-query CCDS DB by Nucleotide ID:ENST00000614032Re-query CCDS DB by Protein ID:ENSP00000481301
Original member Current member NCBI NM_006841.6 NP_006832.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006841.6Link to Protein Sequence:NP_006832.1Re-query CCDS DB by Nucleotide ID:NM_006841Re-query CCDS DB by Protein ID:NP_006832Link to BLAST:NP_006832.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006832.1 504 Q99624 504 100% 0 0

Chromosomal Locations for CCDS 74940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50214200 50214300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50214402 50214483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50214653 50214768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50215386 50215459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50215544 50215636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50215740 50215821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50217238 50217320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50217415 50217473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50217676 50217840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50217917 50217996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50218270 50218370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50218593 50218717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50218804 50218948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50219881 50219984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50220073 50220177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGAGGCGCCTTTGCAGACAGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTCAGAGGGGCTGCTCC
CGGTCATCACCCCCATGGCAGGCAACCAGAGGGTCGAGGACCCTGCACGGAGCTGTATGGAGGGCAAGAG
CTTCCTACAGAAAAGTCCCAGCAAGGAGCCACACTTCACTGACTTCGAGGGGAAGACATCATTCGGGATG
TCAGTGTTCAACCTCAGCAATGCCATCATGGGCAGCGGCATCCTGGGACTCGCCTATGCCATGGCCAATA
CGGGCATTATCCTTTTCCTGTTCCTGTTGACAGCTGTCGCCTTGCTCTCCAGCTACTCCATCCACCTGCT
ACTCAAGTCCTCAGGGGTCGTGGGCATCCGTGCCTATGAGCAGCTGGGCTACCGTGCCTTTGGGACCCCA
GGAAAGCTGGCAGCAGCCCTGGCCATCACGCTCCAGAACATCGGAGCCATGTCCAGCTACCTGTACATCA
TCAAGTCTGAGCTGCCACTTGTCATACAGACCTTCCTGAACCTGGAGGAGAAAACCTCGGACTGGTACAT
GAACGGGAACTACCTGGTAATCCTTGTCTCTGTCACCATCATTCTGCCCCTGGCACTGATGCGGCAGCTT
GGCTACCTGGGCTACTCCAGCGGCTTCTCTCTTAGCTGCATGGTGTTCTTCCTAATTGCAGTCATCTACA
AAAAGTTCCACGTGCCCTGCCCACTGCCCCCCAACTTCAACAACACCACAGGCAACTTCAGCCACGTGGA
GATCGTGAAGGAGAAGGTGCAGCTGCAGGTCGAGCCTGAGGCTTCAGCCTTCTGCACTCCCAGCTACTTC
ACGCTCAACTCACAGACAGCATACACCATCCCCATCATGGCCTTCGCCTTCGTCTGCCACCCCGAGGTGC
TGCCCATCTATACTGAGCTCAAGGACCCCTCCAAGAAGAAGATGCAGCACATCTCCAACCTGTCCATCGC
TGTCATGTACATCATGTACTTCCTGGCTGCCCTCTTCGGCTACCTCACCTTCTACAACGGGGTGGAGTCG
GAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGACGTCCTGATCCTGTGTGTGCGCGTGGCCGTGC
TGACAGCAGTCACGCTCACAGTGCCCATCGTTCTGTTCCCGGTGCGCCGCGCCATCCAGCAGATGCTGTT
TCCAAACCAGGAGTTCAGCTGGCTGCGGCATGTGCTTATTGCCGTTGGCCTGCTCACTTGTATCAACCTG
CTGGTCATCTTTGCCCCCAACATCCTGGGCATCTTTGGGGTCATCGGTGCCACATCTGCCCCATTCCTCA
TCTTCATCTTCCCTGCCATCTTCTACTTCCGAATCATGCCCACGGAGAAGGAGCCTGCAAGATCCACCCC
CAAAATCCTGGCCCTGTGTTTTGCTATGCTTGGCTTCTTGCTGATGACCATGAGCTTGAGCTTCATCATC
ATTGACTGGGCCTCAGGGACCAGCCGGCATGGAGGAAACCACTAG

Translation (504 aa):
MEAPLQTEMVELVPNGKHSEGLLPVITPMAGNQRVEDPARSCMEGKSFLQKSPSKEPHFTDFEGKTSFGM
SVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGVVGIRAYEQLGYRAFGTP
GKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEKTSDWYMNGNYLVILVSVTIILPLALMRQL
GYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLPPNFNNTTGNFSHVEIVKEKVQLQVEPEASAFCTPSYF
TLNSQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKKKMQHISNLSIAVMYIMYFLAALFGYLTFYNGVES
ELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRAIQQMLFPNQEFSWLRHVLIAVGLLTCINL
LVIFAPNILGIFGVIGATSAPFLIFIFPAIFYFRIMPTEKEPARSTPKILALCFAMLGFLLMTMSLSFII
IDWASGTSRHGGNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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