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Report for CCDS3580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3580.1 Public Homo sapiens 4 CCNI 24 110 108 CCDS HistoryNCBI Gene:10983Re-query CCDS DB by CCDS ID:3580.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3580.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000237654.9 ENSP00000237654.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000237654.9Link to Ensembl Protein Viewer:ENSP00000237654.4Re-query CCDS DB by Nucleotide ID:ENST00000237654Re-query CCDS DB by Protein ID:ENSP00000237654
Original member Current member NCBI NM_001348132.2 NP_001335061.1 Accepted alive Link to Nucleotide Sequence:NM_001348132.2Link to Protein Sequence:NP_001335061.1Re-query CCDS DB by Nucleotide ID:NM_001348132Re-query CCDS DB by Protein ID:NP_001335061Link to BLAST:NP_001335061.1
Original member Current member NCBI NM_001348133.2 NP_001335062.1 Accepted alive Link to Nucleotide Sequence:NM_001348133.2Link to Protein Sequence:NP_001335062.1Re-query CCDS DB by Nucleotide ID:NM_001348133Re-query CCDS DB by Protein ID:NP_001335062Link to BLAST:NP_001335062.1
Original member Current member NCBI NM_006835.3 NP_006826.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006835.3Link to Protein Sequence:NP_006826.1Re-query CCDS DB by Nucleotide ID:NM_006835Re-query CCDS DB by Protein ID:NP_006826Link to BLAST:NP_006826.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335061.1 377 Q14094-1 377 100% 0 0
NP_001335062.1 377 Q14094-1 377 100% 0 0
NP_006826.1 377 Q14094-1 377 100% 0 0

Chromosomal Locations for CCDS 3580.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 77048219 77048662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77055150 77055380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77055962 77056102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77056249 77056323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77058507 77058635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77066249 77066362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGAAGTTTCCAGGGCCTTTGGAAAACCAGAGATTGTCTTTCCTGTTGGAAAAGGCAATCACTAGGGAAG
CACAGATGTGGAAAGTGAATGTGCGGAAAATGCCTTCAAATCAGAATGTTTCTCCATCCCAGAGAGATGA
AGTAATTCAATGGCTGGCCAAACTCAAGTACCAATTCAACCTTTACCCAGAAACATTTGCTCTGGCTAGC
AGTCTTTTGGATAGGTTTTTAGCTACCGTAAAGGCTCATCCAAAATACTTGAGTTGTATTGCAATCAGCT
GTTTTTTCCTAGCTGCCAAGACTGTTGAGGAAGATGAGAGAATTCCAGTACTAAAGGTATTGGCAAGAGA
CAGTTTCTGTGGATGTTCCTCATCTGAAATTTTGAGAATGGAGAGAATTATTCTGGATAAGTTGAATTGG
GATCTTCACACAGCCACACCATTGGATTTTCTTCATATTTTCCATGCCATTGCAGTGTCAACTAGGCCTC
AGTTACTTTTCAGTTTGCCCAAATTGAGCCCATCTCAACATTTGGCAGTCCTTACCAAGCAACTACTTCA
CTGTATGGCCTGCAACCAACTTCTGCAATTCAGAGGATCCATGCTTGCTCTGGCCATGGTTAGTCTGGAA
ATGGAGAAACTCATTCCTGATTGGCTTTCTCTTACAATTGAACTGCTTCAGAAAGCACAGATGGATAGCT
CCCAGTTGATCCATTGTCGGGAGCTTGTGGCACATCACCTTTCTACTCTGCAGTCTTCCCTGCCTCTGAA
TTCCGTTTATGTCTACCGTCCCCTCAAGCACACCCTGGTGACCTGTGACAAAGGAGTGTTCAGATTACAT
CCCTCCTCTGTCCCAGGCCCAGACTTCTCCAAGGACAACAGCAAGCCAGAAGTGCCAGTCAGAGGTACAG
CAGCCTTTTACCATCATCTCCCAGCTGCCAGTGGGTGCAAGCAGACCTCTACTAAACGCAAAGTAGAGGA
AATGGAAGTGGATGACTTCTATGATGGAATCAAACGGCTCTATAATGAAGATAATGTCTCAGAAAATGTG
GGTTCTGTGTGTGGCACTGATTTATCAAGACAAGAGGGACATGCTTCCCCTTGTCCACCTTTGCAGCCTG
TTTCTGTCATGTAG

Translation (377 aa):
MKFPGPLENQRLSFLLEKAITREAQMWKVNVRKMPSNQNVSPSQRDEVIQWLAKLKYQFNLYPETFALAS
SLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSFCGCSSSEILRMERIILDKLNW
DLHTATPLDFLHIFHAIAVSTRPQLLFSLPKLSPSQHLAVLTKQLLHCMACNQLLQFRGSMLALAMVSLE
MEKLIPDWLSLTIELLQKAQMDSSQLIHCRELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLH
PSSVPGPDFSKDNSKPEVPVRGTAAFYHHLPAASGCKQTSTKRKVEEMEVDDFYDGIKRLYNEDNVSENV
GSVCGTDLSRQEGHASPCPPLQPVSVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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