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Report for CCDS17428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17428.1 Public Mus musculus 3 Asic5 23 108 98 CCDS HistoryNCBI Gene:58170Re-query CCDS DB by CCDS ID:17428.1Re-query CCDS DB by GeneID:58170See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029641.9 ENSMUSP00000029641.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029641.9Link to Ensembl Protein Viewer:ENSMUSP00000029641.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029641Re-query CCDS DB by Protein ID:ENSMUSP00000029641
Original member Current member NCBI NM_021370.2 NP_067345.1 Accepted alive Link to Nucleotide Sequence:NM_021370.2Link to Protein Sequence:NP_067345.1Re-query CCDS DB by Nucleotide ID:NM_021370Re-query CCDS DB by Protein ID:NP_067345Link to BLAST:NP_067345.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067345.1 495 Q9R0Y1 495 100% 0 0

Chromosomal Locations for CCDS 17428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 81996951 81996990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81999584 81999890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82004446 82004683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82006480 82006605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82008456 82008605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82009466 82009613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82011960 82012016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82014269 82014437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82019394 82019485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82020933 82021093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGGAACATACTGAGAAATCACAAGTGCACGCGGAGAAAGGACTCTTAGGAAAGATAAAACGTTACCTCT
CAAAGAGACCACTGCCATCTCCAACTGACCGGAAGAAGTTCGATCAAGACTTTGCCATGTCCACTTCCTT
TCATGGGATACATAATATTGCCCAGAACCAGAACAAAGTTCGAAAGGTGATCTGGCTGGCTGTGGTGCTG
GGCTCTGTCTCGCTCTTGGTGTGGCAAATCTACAGTCGTTTGGTCAATTACTTCACATGGCCAACGACAA
CATCTATAGAAGTTCAGTATGTGGAAAAAATCGAGTTCCCAGCTGTGACACTCTGTAACTTGAACAGATT
CCAAACAGAAGCAGTATCTAGATTTGGCATCATTTTCTTCTTGTGGGACATAGTCTCCAAAGTCCTCCGC
CTTCAGGAAATCAGTGCCAACAACACTGGCTCTCCAGAGACCTTAGATTTTGTTACGAATCACCAAAACT
TCAGCATTACAGAGTTTGTCAAGAACAATGGTTTTTATCTCAATAACGACACTTTGGTGCACTGTGAGTT
CTTTGGCAAAACATGCAGTCCAAAGGATTTCAAACACGTCTTTACTGAATATGGGAATTGCTTCACTTTT
AACTACGGTGAGAATATCCAAAACAAGAATAAAGTGAGTGTGTCCGGAAGAGGCTTAAAGCTGCTCCTCG
ACGTCCATCAGGAGGAATTCACTGACAACCCAGTCCCTGGTTTTGCTGATGCTGGTGTCATCTTTGTTAT
TCACTCACCAAAGAAGGAGCCACAGTTTGATGGCTTAGGTTTGTCTTCTCCTGTGGGAATGCATGCACGG
GTGACCATCCGCCAACTGAAGACGGTCCACCAGGAGTACCCATGGGGAGAATGCAATCCCAACATCAAGC
TGAGAAACTTCATTACCTACAGCACTTACGGGTGTCTGAAGGAGTGCAAAGCCCGGCATATACAAAGGCT
GTGTGGATGTCTGCCCTTTCTGCTTCCAGGAAATGGTGTAGAGTGTGACCTACTAGAATACTACAACTGT
GTGTCTCCCATCCTTGATCACATCGAGCGTAAGGGACTATGCACGATGGGAACACACAACTCCAGCTGCC
CTGTGTCATGTGAGGAAACAGAATACCCAGCTACTGTTTCTTATTCTACTTTCCCAAGTCAAAGAGCAAC
AAGGTTTCTTGCCAAGAAATTGAATCAAAGCCAAGAATATATCCGGGAGAATCTCGTGAACATTGAAATA
AACTATAGCGACTTAAACTATAAGATAACGCAGCAACAGAAGGCCGTGAGTGTGCCTGAGTTACTTGCAG
ATGTTGGCGGTCAGCTGGGACTGTTCTGTGGAGCTAGTTTGATTACAATTATAGAAATTATTGAATATTT
TTTCACCAATTTCTACTGGGTACTCATTTTCTTTTTGCTGAAAATACTTGAAACGATACAGCGGACTTCT
CCACCTCAGGCAGTTTAA

Translation (495 aa):
MEHTEKSQVHAEKGLLGKIKRYLSKRPLPSPTDRKKFDQDFAMSTSFHGIHNIAQNQNKVRKVIWLAVVL
GSVSLLVWQIYSRLVNYFTWPTTTSIEVQYVEKIEFPAVTLCNLNRFQTEAVSRFGIIFFLWDIVSKVLR
LQEISANNTGSPETLDFVTNHQNFSITEFVKNNGFYLNNDTLVHCEFFGKTCSPKDFKHVFTEYGNCFTF
NYGENIQNKNKVSVSGRGLKLLLDVHQEEFTDNPVPGFADAGVIFVIHSPKKEPQFDGLGLSSPVGMHAR
VTIRQLKTVHQEYPWGECNPNIKLRNFITYSTYGCLKECKARHIQRLCGCLPFLLPGNGVECDLLEYYNC
VSPILDHIERKGLCTMGTHNSSCPVSCEETEYPATVSYSTFPSQRATRFLAKKLNQSQEYIRENLVNIEI
NYSDLNYKITQQQKAVSVPELLADVGGQLGLFCGASLITIIEIIEYFFTNFYWVLIFFLLKILETIQRTS
PPQAV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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