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Report for CCDS19581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19581.1 Public Mus musculus 5 Mlec 23 108 98 CCDS HistoryNCBI Gene:109154Re-query CCDS DB by CCDS ID:19581.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112121.5 ENSMUSP00000107749.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112121.5Link to Ensembl Protein Viewer:ENSMUSP00000107749.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112121Re-query CCDS DB by Protein ID:ENSMUSP00000107749
Original member Current member NCBI NM_175403.3 NP_780612.2 Accepted alive Link to Nucleotide Sequence:NM_175403.3Link to Protein Sequence:NP_780612.2Re-query CCDS DB by Nucleotide ID:NM_175403Re-query CCDS DB by Protein ID:NP_780612Link to BLAST:NP_780612.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780612.2 291 Q6ZQI3 291 100% 0 0

Chromosomal Locations for CCDS 19581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115147915 115148144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115150069 115150126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115150208 115150384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115150816 115150994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115157803 115158034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGCTGAGGCCCCGGGGAGCCGAGGGAACCGCTGTGGCGCTTCTCCGGCTGCTTCTGTTGCTGCTGCTGC
TGGGACCGAAGCTCCGGGGTCCGGGGCTCGGCGTGGTCGGCGCCGCCGGGGCCGGACTGCCGGAGAGCGT
CATCTGGGCAGTGAACGCAGGCGGCGAGGCGCATGTGGACGTGCACGGGATCCACTTCCGCAAGGACCCT
CTGGAAGGCCGGGTGGGCCGAGCCTCGGACTATGGCATGAAACTGCCGATCCTGCGCTCCACCCCGGAGG
ACCAGATCCTATATCAGACAGAGCGGTACAATGAAGAGACCTTTGGCTACGAAGTACCCGTCAAGGAGGA
GGGCGACTATGTGCTGGTGTTGAAGTTTGCTGAGGTCTACTTTGCACAGTCTCAGCAGAAGGTGTTTGAT
GTCCGGTTGAATGGCCATGTGGTGGTGAAGGACTTGGACATCTTTGACCGTGTCGGGCACAGCACGGCCC
ATGATGAAATCATCCCGATGAGCATCAGGAAGGGGAAGCTGAGTGTGCGGGGGGAGGTGTCCACCTTCAC
AGGGAAGCTATACATCGAGTTTGTCAAGGGGTACTATGACAATCCCAAAGTCTGTGCACTCTACATCCTG
GCTGGGACAGTAGACGATGTACCAAAGCTGCAGCCTCATCCAGGATTGGAAAAGAAAGAAGAGGAGGAGG
AGGAGGAGGAATATGATGAGGGGTCTAATCTCAAAAGACAGACCAACAAGAACAGGGTGCAGTCAGGCCC
CCGCACGCCTAACCCCTATGCCTCGGACAACAGCAGCCTCATGTTCCCTATCCTGGTGGCCTTCGGAGTG
TTCATTCCAACCCTCTTCTGCCTCTGCCGCTTGTGA

Translation (291 aa):
MLRPRGAEGTAVALLRLLLLLLLLGPKLRGPGLGVVGAAGAGLPESVIWAVNAGGEAHVDVHGIHFRKDP
LEGRVGRASDYGMKLPILRSTPEDQILYQTERYNEETFGYEVPVKEEGDYVLVLKFAEVYFAQSQQKVFD
VRLNGHVVVKDLDIFDRVGHSTAHDEIIPMSIRKGKLSVRGEVSTFTGKLYIEFVKGYYDNPKVCALYIL
AGTVDDVPKLQPHPGLEKKEEEEEEEEYDEGSNLKRQTNKNRVQSGPRTPNPYASDNSSLMFPILVAFGV
FIPTLFCLCRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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