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Report for CCDS15880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15880.1 Public Mus musculus 2 Miga2 23 108 98 CCDS HistoryNCBI Gene:108958Re-query CCDS DB by CCDS ID:15880.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077977.13 ENSMUSP00000077127.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077977.13Link to Ensembl Protein Viewer:ENSMUSP00000077127.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000077977Re-query CCDS DB by Protein ID:ENSMUSP00000077127
Original member Current member EBI ENSMUST00000100214.9 ENSMUSP00000097787.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100214.9Link to Ensembl Protein Viewer:ENSMUSP00000097787.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100214Re-query CCDS DB by Protein ID:ENSMUSP00000097787
Original member NCBI NM_001242407.1 NP_001229336.1 Updated not alive Link to Nucleotide Sequence:NM_001242407.1Link to Protein Sequence:NP_001229336.1Re-query CCDS DB by Nucleotide ID:NM_001242407Re-query CCDS DB by Protein ID:NP_001229336
Current member NCBI NM_001242407.2 NP_001229336.1 Accepted alive Link to Nucleotide Sequence:NM_001242407.2Link to Protein Sequence:NP_001229336.1Re-query CCDS DB by Nucleotide ID:NM_001242407Re-query CCDS DB by Protein ID:NP_001229336Link to BLAST:NP_001229336.1
Original member Current member NCBI NM_175392.3 NP_780601.1 Accepted alive Link to Nucleotide Sequence:NM_175392.3Link to Protein Sequence:NP_780601.1Re-query CCDS DB by Nucleotide ID:NM_175392Re-query CCDS DB by Protein ID:NP_780601Link to BLAST:NP_780601.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229336.1 593 Q8BK03-1 593 100% 0 0
NP_780601.1 593 Q8BK03-1 593 100% 0 0

Chromosomal Locations for CCDS 15880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30367692 30367787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30368877 30369087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30370295 30370407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30371115 30371232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30371533 30371669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30375673 30375790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30376646 30376746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30377479 30377594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30377971 30378043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30378174 30378260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30381638 30381736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30381939 30382073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30382966 30383019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30383590 30383706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30383929 30384135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGCATTCCGGAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATTCCAG
TGTTCCTGTACACAACTTTTGGTCAGTCCGCGTTCTCCCAGCTGCGGTTGACACCGGGCCTGAGGAAGGT
TCTTTTTGCCACAGCCCTTGGGACTGTGGCCTTGGCCCTGGCTGCCCACCAGCTGAAAAGGCGCCGGCGG
AAGAAGAAGCAGGTGGGCCCTGAGATGGGAGGTGAGCAGCTGGGCACGGTGCCCATGCCCATCCTCATGG
CCCGCAAGGTCCCTTCGGTGAAGAAAGGCTGCTCCAGCAGGAGGGTTCAGAGCCCCAGCAGCAAGAGCAA
CGACACTCTTAGTGGCATCTCCTCCATCGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
ATGGTAGTGGTCAATTCATCCAGCCCTACAGCTGCGTGCTCAGGTTCATGGGAAGCCCGAGGGATGGAGG
AGTCTGTGCCCACCACTGATGGCAGTGCCGAGAGCCTCTATGTGCAAGGCATGGAGCTGTTTGAGGAAGC
CCTGCAGAAATGGGAGCAGGCACTGAGTGTGGGCCAGAGAGGGGATGGAGGCAGCACCCCCACACCAGGC
GACAGCCTCCAGAACCCAGACACCGCATCAGAAGCACTGTCAGAGCCAGAGTCCCAACGAAGGGAGTTTG
CTGAGAAGCTGGAGTCCCTGCTGCACCGGGCCTACCACCTGCAGGAAGAGTTTGGCTCTACCTTCCCCTC
TGACAGCATGCTGTTGGATCTTGAGAGGACCCTAATGCTGCCACTGACTGAGGGCTCACTGCGACTTCGA
GCTGACGATGAGGACAGCCTGACCTCTGAAGACTCCTTTTTCTCAGCCACTGAGATCTTTGAGTCCCTGC
AGATCGGCGAGTACCCGCTTCCTCTCTCCAGGCCTGCTGCTGCCTACGAGGAGGCTCTGCAGCTGGTGAA
GGAAGGAAGAGTCCCTTGCCGAACACTCAGGACAGAGCTGCTGGGCTGCTACAGTGACCAGGACTTCCTA
GCCAAGCTGCATTGTGTACGGCAGGCCTTTGAGGGGCTTCTAGAAGAAAGAAGCAACCAGATCTTCTTTG
GGGAGGTCGGCCGGCAGATGGTGACGGGCCTGATGACCAAGGCTGAGAAGAGTCCCAAAGGCTTCCTGGA
GAGCTATGAGGAGATGCTGAGCTACGCCCTGCGGCCTGAGACCTGGGCTACCACCCGGCTGGAGCTGGAG
GGCAGAGGGGTGGCCTGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGATGCCTTTGAGG
ACCTAGAGAACCCTCCGTCTTCGGTGCTTGCTGTCCTGAGGAACCGCTGGCTGTCTGACAGCTTCAAAGA
AACAGCCCTAGCCACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTCCTGATGGTGCCTGATGGC
TTCATCTCCCATTTCTACTCCGTATCGGAGCATGTTAGCCCTGTGTTGGCCTTTGGCTTCCTCGGACCCA
AGCCCCAGCTCTCGGAAGTCTGTGCTTTCTTCAAGCACCAGATTGTACAATACCTGAGGGACATGTTCGA
CCTGGACAACGTGCGCTACACATCTGTGCCAGCCCTAGCAGAAGACATCCTACAGCTGTCCCGGCGGCGC
AGCGAGATTCTATTGGGCTACCTGGGGGCACCTGTGGCTAGTAGCATCGGGCTGAATGGGCCACTGCCTC
GAGAAAATGGGCCCCTGGAAGAGCTGCAGTAA

Translation (593 aa):
MAFRRTEGMSMIQALAMTVAEIPVFLYTTFGQSAFSQLRLTPGLRKVLFATALGTVALALAAHQLKRRRR
KKKQVGPEMGGEQLGTVPMPILMARKVPSVKKGCSSRRVQSPSSKSNDTLSGISSIEPSKHSGSSHSLAS
MVVVNSSSPTAACSGSWEARGMEESVPTTDGSAESLYVQGMELFEEALQKWEQALSVGQRGDGGSTPTPG
DSLQNPDTASEALSEPESQRREFAEKLESLLHRAYHLQEEFGSTFPSDSMLLDLERTLMLPLTEGSLRLR
ADDEDSLTSEDSFFSATEIFESLQIGEYPLPLSRPAAAYEEALQLVKEGRVPCRTLRTELLGCYSDQDFL
AKLHCVRQAFEGLLEERSNQIFFGEVGRQMVTGLMTKAEKSPKGFLESYEEMLSYALRPETWATTRLELE
GRGVACMSFFDIVLDFILMDAFEDLENPPSSVLAVLRNRWLSDSFKETALATACWSVLKAKRRLLMVPDG
FISHFYSVSEHVSPVLAFGFLGPKPQLSEVCAFFKHQIVQYLRDMFDLDNVRYTSVPALAEDILQLSRRR
SEILLGYLGAPVASSIGLNGPLPRENGPLEELQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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