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Report for CCDS46593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46593.1 Public Homo sapiens 20 MMP24 24 110 108 CCDS HistoryNCBI Gene:10893Re-query CCDS DB by CCDS ID:46593.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46593.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246186.8 ENSP00000246186.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246186.8Link to Ensembl Protein Viewer:ENSP00000246186.6Re-query CCDS DB by Nucleotide ID:ENST00000246186Re-query CCDS DB by Protein ID:ENSP00000246186
Original member Current member NCBI NM_006690.4 NP_006681.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006690.4Link to Protein Sequence:NP_006681.1Re-query CCDS DB by Nucleotide ID:NM_006690Re-query CCDS DB by Protein ID:NP_006681Link to BLAST:NP_006681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006681.1 645 Q9Y5R2 645 100% 0 0

Chromosomal Locations for CCDS 46593.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35226739 35226984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35246840 35246988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35251905 35252021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35254450 35254754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35263791 35263952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35267205 35267419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35269760 35269898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35271569 35271835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35274272 35274609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGCCGAGGAGCCGGGGCGGCCGCGCCGCGCCGGGGCCGCCGCCGCCGCCGCCGCCGCCGGGCCAGGCCC
CGCGCTGGAGCCGCTGGCGGGTCCCTGGGCGGCTGCTGCTGCTGCTGCTGCCCGCGCTCTGCTGCCTCCC
GGGCGCCGCGCGGGCGGCGGCGGCGGCGGCGGGGGCAGGGAACCGGGCAGCGGTGGCGGTGGCGGTGGCG
CGGGCGGACGAGGCGGAGGCGCCCTTCGCCGGGCAGAACTGGTTAAAGTCCTATGGCTATCTGCTTCCCT
ATGACTCACGGGCATCTGCGCTGCACTCAGCGAAGGCCTTGCAGTCGGCAGTCTCCACTATGCAGCAGTT
TTACGGGATCCCGGTCACCGGTGTGTTGGATCAGACAACGATCGAGTGGATGAAGAAACCCCGATGTGGT
GTCCCTGATCACCCCCACTTAAGCCGTAGGCGGAGAAACAAGCGCTATGCCCTGACTGGACAGAAGTGGA
GGCAAAAACACATCACCTACAGCATTCACAACTATACCCCAAAAGTGGGTGAGCTAGACACGCGGAAAGC
TATTCGCCAGGCTTTCGATGTGTGGCAGAAGGTGACCCCACTGACCTTTGAAGAGGTGCCATACCATGAG
ATCAAAAGTGACCGGAAGGAGGCAGACATCATGATCTTTTTTGCTTCTGGTTTCCATGGCGACAGCTCCC
CATTTGATGGAGAAGGGGGATTCCTGGCCCATGCCTACTTCCCTGGCCCAGGGATTGGAGGAGACACCCA
CTTTGACTCCGATGAGCCATGGACGCTAGGAAATGCCAACCATGACGGGAACGACCTCTTCCTGGTGGCT
GTGCATGAGCTGGGCCACGCGCTGGGACTGGAGCACTCCAGCGACCCCAGCGCCATCATGGCGCCCTTCT
ACCAGTACATGGAGACGCACAACTTCAAGCTGCCCCAGGACGATCTCCAGGGCATCCAGAAGATCTATGG
ACCCCCAGCCGAGCCTCTGGAGCCCACAAGGCCACTCCCTACACTCCCCGTCCGCAGGATCCACTCACCA
TCGGAGAGGAAACACGAGCGCCAGCCCAGGCCCCCTCGGCCGCCCCTCGGGGACCGGCCATCCACACCAG
GCACCAAACCCAACATCTGTGACGGCAACTTCAACACAGTGGCCCTCTTCCGGGGCGAGATGTTTGTCTT
TAAGGATCGCTGGTTCTGGCGTCTGCGCAATAACCGAGTGCAGGAGGGCTACCCCATGCAGATCGAGCAG
TTCTGGAAGGGCCTGCCTGCCCGCATCGACGCAGCCTATGAAAGGGCCGATGGGAGATTTGTCTTCTTCA
AAGGTGACAAGTATTGGGTGTTTAAGGAGGTGACGGTGGAGCCTGGGTACCCCCACAGCCTGGGGGAGCT
GGGCAGCTGTTTGCCCCGTGAAGGCATTGACACAGCTCTGCGCTGGGAACCTGTGGGCAAGACCTACTTT
TTCAAAGGCGAGCGGTACTGGCGCTACAGCGAGGAGCGGCGGGCCACGGACCCTGGCTACCCTAAGCCCA
TCACCGTGTGGAAGGGCATCCCACAGGCTCCCCAAGGAGCCTTCATCAGCAAGGAAGGATATTACACCTA
TTTCTACAAGGGCCGGGACTACTGGAAGTTTGACAACCAGAAACTGAGCGTGGAGCCAGGCTACCCGCGC
AACATCCTGCGTGACTGGATGGGCTGCAACCAGAAGGAGGTGGAGCGGCGGAAGGAGCGGCGGCTGCCCC
AGGACGACGTGGACATCATGGTGACCATCAACGATGTGCCGGGCTCCGTGAACGCCGTGGCCGTGGTCAT
CCCCTGCATCCTGTCCCTCTGCATCCTGGTGCTGGTCTACACCATCTTCCAGTTCAAGAACAAGACAGGC
CCTCAGCCTGTCACCTACTATAAGCGGCCAGTCCAGGAATGGGTGTGA

Translation (645 aa):
MPRSRGGRAAPGPPPPPPPPGQAPRWSRWRVPGRLLLLLLPALCCLPGAARAAAAAAGAGNRAAVAVAVA
RADEAEAPFAGQNWLKSYGYLLPYDSRASALHSAKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKPRCG
VPDHPHLSRRRRNKRYALTGQKWRQKHITYSIHNYTPKVGELDTRKAIRQAFDVWQKVTPLTFEEVPYHE
IKSDRKEADIMIFFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNANHDGNDLFLVA
VHELGHALGLEHSSDPSAIMAPFYQYMETHNFKLPQDDLQGIQKIYGPPAEPLEPTRPLPTLPVRRIHSP
SERKHERQPRPPRPPLGDRPSTPGTKPNICDGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQ
FWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYF
FKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPR
NILRDWMGCNQKEVERRKERRLPQDDVDIMVTINDVPGSVNAVAVVIPCILSLCILVLVYTIFQFKNKTG
PQPVTYYKRPVQEWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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