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Report for CCDS38703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38703.1 Public Mus musculus 4 Lyrm2 23 108 98 CCDS HistoryNCBI Gene:108755Re-query CCDS DB by CCDS ID:38703.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062802.4 ENSMUSP00000061451.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062802.4Link to Ensembl Protein Viewer:ENSMUSP00000061451.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062802Re-query CCDS DB by Protein ID:ENSMUSP00000061451
Original member Current member NCBI NM_175364.4 NP_780573.1 Accepted alive Link to Nucleotide Sequence:NM_175364.4Link to Protein Sequence:NP_780573.1Re-query CCDS DB by Nucleotide ID:NM_175364Re-query CCDS DB by Protein ID:NP_780573Link to BLAST:NP_780573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780573.1 88 Q8R033 88 100% 0 0

Chromosomal Locations for CCDS 38703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 32800291 32800335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32800610 32800750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32801143 32801223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (267 nt):
ATGGCGGCATCCCGCTTGCCTCCCGCAGCCCTGACGCTGAAGCAGTTCATGAGAAGGCAGCAAGTTCTCC
TCCTCTACAGAAAGATTTTGCGAGCGATTAGGCAAGTTCCAAGTGATTCTGACCGAAAATACCTTCAGGA
TTGGGCCAGGGAAGAATTTAAAAGAAACAAAAGTGCCACAGAAGAGGATACAATCCGAATGATGATAACC
CAAGGCAATATGCAGCTAAAGGAACTAGAAAGGACGCTTGCCTTAGCCAACTCGTAA

Translation (88 aa):
MAASRLPPAALTLKQFMRRQQVLLLYRKILRAIRQVPSDSDRKYLQDWAREEFKRNKSATEEDTIRMMIT
QGNMQLKELERTLALANS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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