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Report for CCDS84424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84424.1 Public Mus musculus 19 Fam111a 23 108 98 CCDS HistoryNCBI Gene:107373Re-query CCDS DB by CCDS ID:84424.1Re-query CCDS DB by GeneID:107373See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151307.7 ENSMUSP00000123598.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151307.7Link to Ensembl Protein Viewer:ENSMUSP00000123598.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151307Re-query CCDS DB by Protein ID:ENSMUSP00000123598
Original member Current member NCBI NM_001346545.1 NP_001333474.1 Accepted alive Link to Nucleotide Sequence:NM_001346545.1Link to Protein Sequence:NP_001333474.1Re-query CCDS DB by Nucleotide ID:NM_001346545Re-query CCDS DB by Protein ID:NP_001333474Link to BLAST:NP_001333474.1

Chromosomal Locations for CCDS 84424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12586889 12588598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGCCAAGGGATATAACCAACACCAGGGACCAAAGACCACTTTCACCCAGGAAAACTCGACAAGATCAGA
CTCCTCCCCTAAATAAGAAAATCACAGTAACCTTGGGTGTGAACTCTAGGAAACACAAAAACATGAAATA
TGAGCTCACGTGTAGGGAGACAAGCAGCTTGTATGCAGCACTCAACACTCTCAGTGCTGTCAGAGAAGAG
GTAGAAAGTCAAAAGGGCAGAGAAATGCTGGTGTGTGGCAAAGAAGGAATTGAAGGGTACTTAAACCTTG
GCATGCCCGTCTGCTGTATACCAGAAGGCAGCCATGTCGTCATTACATTTTGTCAATGTAAAAGTAAGAC
ACAGGAAAATAAACAATTCTTTGAATCACAGGACCAAGCATCTACCAATTACGTCCGATTTTGCATTCAT
GCAGTTGGGAGTAAGAGGAAAAAGATTCTGAAGTGTGGAGAACTTCAGAAAGAGGGGAACAAACTCTGTG
TCTATGGCTTCAAAGGAGAGACCATCAGGGACACTCTGAGGAAGGATGGCAGGTTTTGTACTTTCATAGA
GAGTGACGATTGGAAACTCATTAATGACCTGGACACCATCATAGAAAACACACAGCCAGTTGATGAGTTA
GAGGGCAAGCTTTTTCAGGTTGCAGCTGAGCTACCAAAGAACCCCAGAGTAGTCTCTGTCACTCAGAATT
CTGGGTCAGAGAACAGAAACTTTCATAAGCTAGAAGAGTACATTGTGAATGAGTACACTACATTGAAAGA
AGAAGGAAAAAAACTTAGAGCATACATCAAGGAAAAAAGTGAAAAAAGGAAGAAGAAAGCTTCCTTATTC
AAAGTGCATAAAGAACACTTTGGGAAAATGACAAGAAATTCTACTCCTGTTAAAGTGGTCAAACATCTTT
CGAGGGTCAGTGACTCAGTTGGGTTCCTATGGTGGAACAACAATGGAAATGCAGGCTGTGCCACCTGCTT
TGTTTTTAAAGAGTTGTACATTTTGACTTGTCAGCATGTGATAGCTAGCATTGTGGGTGAAGGCATAGAT
TCAAGTGAGTGGGCAAACATAATTAGTCAGTGTGTAAAGGTGACCTTTGATTATGAAGAGTTACTACCAA
CAGGAGACAAGTTTTTTATGGTTAAACCTTGGTTTGAAATATCTGATAAACACCTTGACTATGCTGTCCT
GGAACTGAAGGAAAATGGACAAGAAGTACCTGCTGGGCTGTATCATAGAATAAGACCTGTGCCACATAGT
GGGTTGATTTATATCATTGGCCATCCTGAGGGAGAAAAGAAGTCTATTGATTGCTGTACAGTGGTCCCTC
AAAGTAGTAGAAGAAAAAAATGTCAGGAAAATTTTCAAGCAAGAGAGGAAGCAGGCTTCTGTTTTTCTAC
ATCTTTTATCCATATGTACACACAAAGAAGTTTCCAGGAAATGCTTCACAACTCTGATGTGGTTACTTAT
GACACCAGTTTTTTTGGTGGGTCTTCTGGATCCCCAGTATTTGATTCTAATGGTTCATTGGTGGCCATGC
ATGCTGCTGGCATCACTTGTACATACCAGGCTGGAGTTTCCAATATCATTGAGTTTGGTTCTATTATGGA
ATCCATTGATGATCATATGAAGCAAGATAAATATAAAGAGTGGTATAACACAATTTCTGGAAATGTTCAG
AATGTAGAAATGCTGAGCATAGATTTCTGA

Translation (569 aa):
MPRDITNTRDQRPLSPRKTRQDQTPPLNKKITVTLGVNSRKHKNMKYELTCRETSSLYAALNTLSAVREE
VESQKGREMLVCGKEGIEGYLNLGMPVCCIPEGSHVVITFCQCKSKTQENKQFFESQDQASTNYVRFCIH
AVGSKRKKILKCGELQKEGNKLCVYGFKGETIRDTLRKDGRFCTFIESDDWKLINDLDTIIENTQPVDEL
EGKLFQVAAELPKNPRVVSVTQNSGSENRNFHKLEEYIVNEYTTLKEEGKKLRAYIKEKSEKRKKKASLF
KVHKEHFGKMTRNSTPVKVVKHLSRVSDSVGFLWWNNNGNAGCATCFVFKELYILTCQHVIASIVGEGID
SSEWANIISQCVKVTFDYEELLPTGDKFFMVKPWFEISDKHLDYAVLELKENGQEVPAGLYHRIRPVPHS
GLIYIIGHPEGEKKSIDCCTVVPQSSRRKKCQENFQAREEAGFCFSTSFIHMYTQRSFQEMLHNSDVVTY
DTSFFGGSSGSPVFDSNGSLVAMHAAGITCTYQAGVSNIIEFGSIMESIDDHMKQDKYKEWYNTISGNVQ
NVEMLSIDF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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