NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36425.1 Public Mus musculus 12 Rnf144a 23 108 98 CCDS HistoryNCBI Gene:108089Re-query CCDS DB by CCDS ID:36425.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020971.13 ENSMUSP00000020971.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020971.13Link to Ensembl Protein Viewer:ENSMUSP00000020971.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020971Re-query CCDS DB by Protein ID:ENSMUSP00000020971
Original member Current member EBI ENSMUST00000062149.5 ENSMUSP00000056073.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062149.5Link to Ensembl Protein Viewer:ENSMUSP00000056073.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062149Re-query CCDS DB by Protein ID:ENSMUSP00000056073
Original member NCBI NM_001081977.2 NP_001075446.1 Updated not alive Link to Nucleotide Sequence:NM_001081977.2Link to Protein Sequence:NP_001075446.1Re-query CCDS DB by Nucleotide ID:NM_001081977Re-query CCDS DB by Protein ID:NP_001075446
Current member NCBI NM_001081977.3 NP_001075446.1 Accepted alive Link to Nucleotide Sequence:NM_001081977.3Link to Protein Sequence:NP_001075446.1Re-query CCDS DB by Nucleotide ID:NM_001081977Re-query CCDS DB by Protein ID:NP_001075446Link to BLAST:NP_001075446.1
Original member NCBI NM_080563.4 NP_542130.1 Updated not alive Link to Nucleotide Sequence:NM_080563.4Link to Protein Sequence:NP_542130.1Re-query CCDS DB by Nucleotide ID:NM_080563Re-query CCDS DB by Protein ID:NP_542130
Current member NCBI NM_080563.5 NP_542130.1 Accepted alive Link to Nucleotide Sequence:NM_080563.5Link to Protein Sequence:NP_542130.1Re-query CCDS DB by Nucleotide ID:NM_080563Re-query CCDS DB by Protein ID:NP_542130Link to BLAST:NP_542130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075446.1 292 Q925F3 292 100% 0 0
NP_542130.1 292 Q925F3 292 100% 0 0

Chromosomal Locations for CCDS 36425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 26310658 26310789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26314020 26314109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26317649 26317796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26320952 26321159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26327278 26327338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26327503 26327607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26339306 26339440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGACCACAGCAAGGTACCGGCCCACCTGGGACCTGGCCCTCGACCCACTGGTGTCCTGCAAGCTGTGCC
TCGGGGAATACCCAGCGGAGCAGATGACAACCATCGCCCAATGCCAGTGCATCTTCTGTACCCTGTGCCT
GAAACAGTATGTTGAGCTCTTGATCAAAGAAGGGCTAGAAACTGCAATTAGCTGCCCGGATGCTGCCTGT
CCCAAACAGGGCCACCTTCAGGAGAATGAGATTGAGTGTATGGTTGCCGCAGAAATAATGCAGAGATATA
AAAAGCTACAATTTGAAAGAGAGGTGCTCTTTGACCCTTGTCGGACGTGGTGCCCAGCATCCACCTGCCA
GGCCGTGTGCCAACTCCAGGACATAGGGCTGCAGACCCCGCAGCTGGTACAGTGCAAAGCCTGTGACATG
GAATTCTGCTCTGCTTGCAAAGCCCGCTGGCACCCTGGCCAAGGCTGCCCAGAGACCATGCCCATCACAT
TCCTTCCCGGAGAGACCAGCTCTGCTTTCAAGATGGAAGAGGGCGACGCACCCATCAAACGCTGCCCCAA
GTGCAGGGTGTACATCGAGCGGGATGAGGGCTGTGCACAGATGATGTGTAAGAACTGCAAGCATGCCTTC
TGCTGGTACTGCCTGGAGTCTCTGGATGATGATTTCCTTCTGATACATTATGACAAGGGGCCCTGCCGCA
ACAAGCTGGGCCACTCCCGAGCATCAGTGATCTGGCATCGGACACAGGTGGTGGGAATTTTTGCTGGATT
TGGGCTCCTGCTCTTAGTGGCCTCCCCTTTCCTGCTCCTGGCCACACCCTTCGTGCTTTGCTGCAAATGC
AAGTGCAGTAAAGGTGACGACGACCCACTGCCCACCTAG

Translation (292 aa):
MTTARYRPTWDLALDPLVSCKLCLGEYPAEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC
PKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDIGLQTPQLVQCKACDM
EFCSACKARWHPGQGCPETMPITFLPGETSSAFKMEEGDAPIKRCPKCRVYIERDEGCAQMMCKNCKHAF
CWYCLESLDDDFLLIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKC
KCSKGDDDPLPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH