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Report for CCDS18551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18551.1 Public Mus musculus 4 Cdc20 23 108 98 CCDS HistoryNCBI Gene:107995Re-query CCDS DB by CCDS ID:18551.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18551.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006565.12 ENSMUSP00000006565.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006565.12Link to Ensembl Protein Viewer:ENSMUSP00000006565.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000006565Re-query CCDS DB by Protein ID:ENSMUSP00000006565
Original member Current member NCBI NM_023223.2 NP_075712.2 Accepted alive Link to Nucleotide Sequence:NM_023223.2Link to Protein Sequence:NP_075712.2Re-query CCDS DB by Nucleotide ID:NM_023223Re-query CCDS DB by Protein ID:NP_075712Link to BLAST:NP_075712.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075712.2 499 Q9JJ66 499 100% 0 0

Chromosomal Locations for CCDS 18551.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118432963 118433141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118433481 118433598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118434751 118434876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118435473 118435701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118435777 118435871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118435969 118436165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118436260 118436388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118436510 118436606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118436694 118436842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118436941 118437121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGCGCAGTTCGTGTTCGAGAGCGATTTGCACTCACTGCTTCAACTGGACGCACCCATCCCCAATGCCC
CGGTTGCGCGCTGGCAGCGCAAAGCAAAGGAAGCCACAGGCCCAGCCCCCTCGCCCATGCGGGCCGCCAA
CAGATCACACAGCGCCGGGCGGACCCCGGGCCGAACTCCTGGCAAATCTAGTTCCAAGGTTCAGACCACC
CCTAGCAAACCTGGAGGTGACCGCTTTATCCCCCAACGCAGTGCTTCTCAAATGGAGGTGGCCAGCTTCC
TCTTAAGCAAGGAAAACCAGCCGGAAGACAGGGGGACGCCCACCAAAAAGGAGCATCAGAAAGCCTGGTC
TCTCAACCTGAACGGTTTTGATGTGGAGGAAGCCAAGATCCTCAGGCTCAGCGGCAAACCTCAGAATGCC
CCAGAAGGCTACCAGAACAGACTGAAAGTACTGTACAGTCAGAAAGCCACGCCTGGCTCCAGCAGGAAGA
CTTGCAGATACATCCCTTCTCTGCCAGACAGGATCCTTGATGCCCCCGAAATCCGGAATGACTACTACCT
GAATCTTGTAGATTGGAGCTCTGGAAATGTATTGGCTGTGGCACTGGACAACAGTGTGTACTTATGGAAC
GCTGGTTCTGGTGACATCCTGCAGTTGTTGCAAATGGAGCAGCCTGGAGACTACATATCCTCGGTGGCCT
GGATCAAGGAGGGCAACTACCTAGCTGTAGGCACCAGCAATGCTGAGGTCCAGCTCTGGGATGTGCAGCA
GCAGAAACGACTTCGAAACATGACCAGTCACTCCGCTCGAGTAAGCTCCCTCAGTTGGAACAGCTATATC
CTATCCAGTGGTTCACGGTCTGGCCACATCCACCACCATGATGTTCGGGTAGCAGAACACCATGTGGCCA
CACTGAGTGGCCATAGCCAGGAAGTATGTGGGCTTCGCTGGGCCCCAGATGGACGACATCTGGCAAGTGG
TGGCAATGATAACATTGTCAACGTGTGGCCTAGTGGTCCTGGAGAAAGTGGATGGGCTCCCCTGCAAACA
TTCACTCAACATCAAGGCGCTGTCAAGGCTGTGGCATGGTGTCCCTGGCAGTCCAATATCCTGGCAACAG
GAGGAGGAACCAGTGACCGGCACATTCGCATTTGGAACGTCTGCTCAGGGGCCTGTCTGAGTGCTGTGGA
TGTGCATTCCCAGGTGTGCTCCATCCTCTGGTCTCCCCACTATAAGGAGCTGATCTCAGGTCACGGCTTT
GCCCAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAG
CACGGGTCCTGGGTCTTACAATGAGTCCAGATGGGGCCACAGTGGCATCAGCAGCAGCTGATGAGACTCT
ACGGTTGTGGCGCTGCTTTGAGATGGACCCTGCCCTTCGGCGTGAGCGGGAAAAAGCCAGTGTAGCTAAA
AGTAGCCTCATCCACCAAGGCATCCGTTGA

Translation (499 aa):
MAQFVFESDLHSLLQLDAPIPNAPVARWQRKAKEATGPAPSPMRAANRSHSAGRTPGRTPGKSSSKVQTT
PSKPGGDRFIPQRSASQMEVASFLLSKENQPEDRGTPTKKEHQKAWSLNLNGFDVEEAKILRLSGKPQNA
PEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWN
AGSGDILQLLQMEQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNSYI
LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWAPLQT
FTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKELISGHGF
AQNQLVIWKYPTMAKVAELKGHTARVLGLTMSPDGATVASAAADETLRLWRCFEMDPALRREREKASVAK
SSLIHQGIR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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