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Report for CCDS24393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24393.1 Public Mus musculus 11 Thoc5 23 108 98 CCDS HistoryNCBI Gene:107829Re-query CCDS DB by CCDS ID:24393.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038237.7 ENSMUSP00000045580.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038237.7Link to Ensembl Protein Viewer:ENSMUSP00000045580.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000038237Re-query CCDS DB by Protein ID:ENSMUSP00000045580
Original member NCBI NM_172438.3 NP_766026.1 Updated not alive Link to Nucleotide Sequence:NM_172438.3Link to Protein Sequence:NP_766026.1Re-query CCDS DB by Nucleotide ID:NM_172438Re-query CCDS DB by Protein ID:NP_766026
Current member NCBI NM_172438.4 NP_766026.1 Accepted alive Link to Nucleotide Sequence:NM_172438.4Link to Protein Sequence:NP_766026.1Re-query CCDS DB by Nucleotide ID:NM_172438Re-query CCDS DB by Protein ID:NP_766026Link to BLAST:NP_766026.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766026.1 683 Q8BKT7 683 99.8536% 0 1

Chromosomal Locations for CCDS 24393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4899811 4899906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4901152 4901295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4902086 4902199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4902335 4902432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4904095 4904241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4905641 4905755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4910627 4910759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4912781 4912858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4914270 4914310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4914522 4914621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4915489 4915597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4918124 4918225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4919733 4919829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4920377 4920491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4921922 4922025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4922139 4922226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4924748 4924863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4926046 4926236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4928675 4928738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGTCATCAGAATCCAGCAAAAAACGGAAACCCAAAGTGATCCGGAGTGATGGAACCCCAACTGAAGGGA
AACGGAACCGGTCTGACACGGAGCAGGAAGGCAAATACTACAGTGAGGAGGCTGAAGTTGACCTGCGGGA
CCCTGGCAGAGACTATGAGTTGTACAAATACACTTGCCAGGAGCTACAAAGGCTGATGGCCGAGATCCAG
GACCTGAAGAGTAAGGGCAGCAAGGACCTGGCCATTGAAATTGAAGAACGAAGGATCCAGAGCTGTGTGC
ACTTCATGACTCTAAAGAAGCTTAACCGATTAGCCCACATCAGATTAAAGAAAGGAAGAGACCAGACCCA
CGAGGCCAAGCAGAAAGTCGATGCCTACCACCTACAGCTACAGAACCTGCTCTACGAAGTGATGCACCTG
CAGAAGGAGATCACCAAATGTCTGGAGTTCAAGTCAAAGCATGAAGAAATTGATCTGGTCAGCTTAGAGG
AATTTTATTCAGAGGCTCCACCAAGCATCAGCAAGGCCGAGATCACCATGGGAGACCCTCACCAACAAAC
ATTGGCACGTTTGGACTGGGAGCTGGAGCAGCGGAAAAGGCTGGCAGAAAAGTACCGAGAATGTCTGTCT
AACAAGGAGAAGATCCTGAAGGAGATTGAGGTGAAGAGGGACTATCTGAGCAGCCTCCAGCCTCGCCTCA
ACAGCATCATGCAGGCTTCCCTGCCAGTGCAAGAATACCTGTTCATGCCATTTGACCAGGCGCACAAACA
GTATGAGACTGCCAGGCACCTGCCGCCTCCCCTCTATGTGCTCTTTGTGCAGGCCACTGCATACGGGCAG
GCCTGTGATAAGACGCTGTCCGTGGCAATTGAAGGCAGTGTGGACGAAGCCAAAGCTCTTTTCAAGCCCC
CTGAGGACTCCCAAGATGATGAGAGCGACTCAGATGCTGAAGAGGAGCAGACGACGAAGCGGCGGCGGCC
CACTCTCGGGGTTCAGTTGGATGACAAGCGCAAGGAGATGCTAAAAAGGCACCCACTGTCTGTCCTGCTG
GATCTGAAGTGCAAAGACAACAGTGTGCTTCATCTGACTTTCTACTATCTCATGAACCTCAACATCATGA
CAGTGAAAGCCAAAGTGACGACCGCCGTGGAGCTGATCACCCCCATCAGTGCAGGAGACTTACTGTCTCC
TGACTCGGTCTTGAGCTGCTTGTATCCGGGAGATCATGGGAAAAAAACTCCAAATCCAGCCAATCAGTAT
CAGTTTGACAAAGTTGGCATCCTGACTTTGAGAGACTATGTACTTGAGTTAGGTCACCCCTACTTGTGGG
TACAGAAGCTGGGTGGCCTCCACTTCCCCAAAGAGCAGCCCCAGCAAACAGTGATGCCTGACCACTCACA
GAGCGCCAGCCACATGGAGACCACCATGAAACTGCTGAAGACCAGGGTACAGTCCCGCCTGGCTCTCCAC
AAACAGTTTGCATCTCTGGAACATGGCATTGTGCCCGTCACCAGCGATTGCCAGGACCTCTTCCCTGCCA
AGGTTGTTTCTCGCCTGGTAAAGTGGGTGATAATTACCCATGAAGATTACATGGAGCTGCACTTCACTAA
GGACATTGTGGAGGCAGGACTGGCCGGAGACACCAATCTCTACTACCTGGCGCTAATTGAAAGGGGAACA
GCTAAACTTCAGGCTGCTGTGGTACTAAACCCTGGCTACTCCTCCATCCCACCGGTTTTCCGACTCTGTC
TAAACTGGAAAGGGGAGAAAACCAACAGCAACGATGACAATATTCGGGCTATGGAGAGTGAAGTCAACGT
GTGCTATAAGGAGTTGTGTGGCCCTCGGCCCAGTCACCAGCTCCTGACCAACCAGCTGCAGAGACTGTGT
GTGCTGCTGGACGTCTACCTGGAGACCGAGAGCCACGATGACAGCTTCGAGGGCCCCAAGGAGTTTCCCC
AGGAGAAGATGTGCCTGCGGCTTTTTAGGGGTCCGAGTAGGATGAAGCCGTTTAAATACAACCATCCCCA
AGGGTTCTTCAGCCACCGCTGA

Translation (683 aa):
MSSESSKKRKPKVIRSDGTPTEGKRNRSDTEQEGKYYSEEAEVDLRDPGRDYELYKYTCQELQRLMAEIQ
DLKSKGSKDLAIEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHL
QKEITKCLEFKSKHEEIDLVSLEEFYSEAPPSISKAEITMGDPHQQTLARLDWELEQRKRLAEKYRECLS
NKEKILKEIEVKRDYLSSLQPRLNSIMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQ
ACDKTLSVAIEGSVDEAKALFKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVLL
DLKCKDNSVLHLTFYYLMNLNIMTVKAKVTTAVELITPISAGDLLSPDSVLSCLYPGDHGKKTPNPANQY
QFDKVGILTLRDYVLELGHPYLWVQKLGGLHFPKEQPQQTVMPDHSQSASHMETTMKLLKTRVQSRLALH
KQFASLEHGIVPVTSDCQDLFPAKVVSRLVKWVIITHEDYMELHFTKDIVEAGLAGDTNLYYLALIERGT
AKLQAAVVLNPGYSSIPPVFRLCLNWKGEKTNSNDDNIRAMESEVNVCYKELCGPRPSHQLLTNQLQRLC
VLLDVYLETESHDDSFEGPKEFPQEKMCLRLFRGPSRMKPFKYNHPQGFFSHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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