NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20160.1 Public Mus musculus 6 Nod1 23 108 98 CCDS HistoryNCBI Gene:107607Re-query CCDS DB by CCDS ID:20160.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060655.14 ENSMUSP00000055747.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060655.14Link to Ensembl Protein Viewer:ENSMUSP00000055747.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000060655Re-query CCDS DB by Protein ID:ENSMUSP00000055747
Original member Current member EBI ENSMUST00000168172.3 ENSMUSP00000130487.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168172.3Link to Ensembl Protein Viewer:ENSMUSP00000130487.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168172Re-query CCDS DB by Protein ID:ENSMUSP00000130487
Original member Current member NCBI NM_001171007.1 NP_001164478.1 Accepted alive Link to Nucleotide Sequence:NM_001171007.1Link to Protein Sequence:NP_001164478.1Re-query CCDS DB by Nucleotide ID:NM_001171007Re-query CCDS DB by Protein ID:NP_001164478Link to BLAST:NP_001164478.1
Original member Current member NCBI NM_172729.3 NP_766317.1 Accepted alive Link to Nucleotide Sequence:NM_172729.3Link to Protein Sequence:NP_766317.1Re-query CCDS DB by Nucleotide ID:NM_172729Re-query CCDS DB by Protein ID:NP_766317Link to BLAST:NP_766317.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164478.1 953 Q8BHB0 953 100% 0 0
NP_766317.1 953 Q8BHB0 953 100% 0 0

Chromosomal Locations for CCDS 20160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54924937 54925009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54928035 54928118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54930176 54930259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54933560 54933643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54934395 54934478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54937354 54937437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54938138 54938221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54939304 54939387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54943131 54944955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54947949 54948123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54949432 54949632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGGAGGAACACGGCCATCATGAGATGGAAGGCACCCCATTGGGTTGTCACTCCCACATTAAACTGCTGA
AGATCAACAGGGAACATCTGGTCACCAACATTCGGAACACTCAGTGTCTGGTGGACAACTTGCTGGAGAA
TGGCTACTTCTCAGCCGAAGATGCAGAGATTGTGTGTGCCTGTCCCACCAAGCCTGACAAGGTCCGAAAG
ATCCTTGACCTGGTGCAGAGCAAAGGCGAGGAGGTGTCTGAGTTCTTCCTCTACGTGCTGCAGCAGCTGG
AGGATGCTTACGTGGACCTCAGGCTGTGGCTCTCAGAAATTGGCTTCTCCCCTTCCCAGCTCATTCGGAC
CAAAACTATCGTCAATACTGACCCAGTAAGCAGGTATACCCAACAGCTGCGACACCAACTGGGCCGCGAC
TCCAAGTTCATGCTGTGCTACGCCCAGAAGGAGGACCTGCTGCTGGAGGAGACCTATATGGACACACTCA
TGGAGCTGGTAGGCTTCAACAATGAAAACCTGGGCAGCCTAGGAGGCCTGGATTGCCTGCTGGACCACAG
TACGGGCGTCCTCAACGAGCATGGCGAGACTGTCTTCGTGTTCGGGGACGCGGGAGTGGGCAAGTCCATG
CTGCTGCAGAGGTTGCAGAGCCTCTGGGCGTCAGGCAGGTTGACCTCCACAGCCAAATTCTTCTTCCACT
TCCGCTGCCGCATGTTCAGCTGCTTCAAGGAGAGCGACATGCTGAGTCTGCAGGACCTGCTCTTCAAGCA
TTTCTGCTACCCGGAGCAGGACCCCGAGGAGGTGTTCTCCTTCTTGCTGCGCTTTCCCCACACAGCGCTC
TTCACTTTTGACGGCCTGGATGAGCTGCACTCAGACTTCGACCTGAGCCGCGTGCCGGATAGCTGCTGCC
CCTGGGAGCCGGCTCACCCTCTGGTCCTGCTGGCTAACCTCCTAAGTGGGAGGCTGCTCAAGGGTGCCGG
CAAATTGCTCACTGCTCGCACAGGCGTGGAGGTCCCCCGCCAGCTCCTGCGCAAAAAGGTGCTGCTCCGG
GGCTTCTCCCCAAGTCACCTGCGCGCCTATGCCCGCCGGATGTTCCCCGAGCGCACAGCGCAGGAGCATC
TGCTGCAGCAGCTGGATGCCAACCCCAACCTCTGCAGCCTGTGCGGGGTGCCGCTCTTCTGTTGGATCAT
CTTCCGTTGTTTCCAGCACTTCCAGACGGTCTTCGAGGGCTCCTCTTCACAGTTGCCGGACTGTGCTGTG
ACCCTGACCGATGTCTTTCTGCTGGTCACTGAGGTGCATCTGAACAGGCCGCAGCCCAGCAGCCTGGTGC
AGCGCAACACGCGCAGCCCGGCGGAAACCCTACGTGCAGGCTGGCGCACGCTGCATGCGCTGGGAGAGGT
GGCTCACCGAGGCACCGACAAGAGCCTCTTTGTGTTTGGCCAGGAGGAGGTGCAGGCGTCGAAGCTGCAG
GAAGGAGATCTGCAGCTGGGCTTCCTGCGGGCTTTGCCCGATGTGGGCCCTGAGCAGGGCCAGTCTTACG
AATTTTTCCACCTTACGCTCCAGGCCTTCTTCACCGCCTTCTTCCTGGTAGCAGATGACAAAGTGAGCAC
CCGGGAGTTGCTGAGGTTCTTTCGAGAATGGACGTCTCCTGGAGAGGCAACAAGCTCGTCCTGCCATTCT
TCCTTCTTCTCCTTCCAGTGCCTGGGCGGCAGAAGCCGGTTGGGCCCTGATCCTTTCAGGAACAAAGATC
ACTTCCAGTTCACCAACCTCTTCCTGTGCGGGCTACTGGCCAAAGCCCGACAGAAACTCCTTCGGCAGCT
GGTGCCCAAGGCTATCCTGAGGAGGAAGCGCAAGGCCCTGTGGGCTCACCTGTTTGCTAGCCTGCGCTCC
TACTTGAAGAGCCTACCTCGGGTCCAGTCTGGAGGCTTTAACCAGGTGCATGCCATGCCCACATTCCTGT
GGATGCTGCGCTGCATCTATGAGACGCAGAGCCAGAAGGTGGGGCGCCTCGCCGCCAGGGGCATCAGTGC
GGACTACCTCAAGCTGGCCTTTTGCAACGCTTGCTCTGCGGACTGCAGCGCCCTGTCCTTCGTCCTGCAT
CACTTCCACAGGCAGCTGGCCCTAGACCTGGACAACAACAACCTCAATGACTATGGCGTGCAGGAGCTGC
AGCCTTGCTTTAGCCGTCTCACGGTTATCAGACTCAGCGTCAACCAGATCACCGACACGGGGGTGAAGGT
GCTATGTGAGGAACTGACCAAGTATAAGATCGTGACGTTCCTGGGTTTATACAACAACCAGATAACTGAT
ATCGGAGCCAGGTATGTGGCCCAAATCCTGGATGAATGCAGAGGCCTCAAGCACCTTAAACTAGGGAAAA
ACAGAATAACAAGTGAGGGCGGGAAGTGTGTGGCTTTGGCTGTGAAGAACAGCACCTCCATCGTTGATGT
TGGGATGTGGGGTAATCAGATTGGAGACGAAGGGGCAAAGGCCTTCGCAGAGGCATTGAAGGACCACCCC
AGCCTGACCACTCTCAGTCTTGCATTCAATGGCATCTCTCCGGAGGGAGGGAAGAGCCTTGCGCAGGCCC
TGAAGCAGAACACCACACTGACAGTAATCTGGCTGACCAAAAATGAACTTAATGATGAGTCTGCAGAGTG
CTTCGCTGAGATGCTGAGAGTGAACCAGACGCTACGGCATTTATGGCTGATCCAGAATCGCATCACAGCC
AAGGGGACAGCGCAGCTGGCGAGGGCACTGCAGAAGAACACAGCCATAACAGAGATTTGTCTCAATGGAA
ACTTGATTAAGCCCGAGGAGGCCAAAGTCTTCGAGAATGAGAAGAGAATCATCTGCTTCTGA

Translation (953 aa):
MEEHGHHEMEGTPLGCHSHIKLLKINREHLVTNIRNTQCLVDNLLENGYFSAEDAEIVCACPTKPDKVRK
ILDLVQSKGEEVSEFFLYVLQQLEDAYVDLRLWLSEIGFSPSQLIRTKTIVNTDPVSRYTQQLRHQLGRD
SKFMLCYAQKEDLLLEETYMDTLMELVGFNNENLGSLGGLDCLLDHSTGVLNEHGETVFVFGDAGVGKSM
LLQRLQSLWASGRLTSTAKFFFHFRCRMFSCFKESDMLSLQDLLFKHFCYPEQDPEEVFSFLLRFPHTAL
FTFDGLDELHSDFDLSRVPDSCCPWEPAHPLVLLANLLSGRLLKGAGKLLTARTGVEVPRQLLRKKVLLR
GFSPSHLRAYARRMFPERTAQEHLLQQLDANPNLCSLCGVPLFCWIIFRCFQHFQTVFEGSSSQLPDCAV
TLTDVFLLVTEVHLNRPQPSSLVQRNTRSPAETLRAGWRTLHALGEVAHRGTDKSLFVFGQEEVQASKLQ
EGDLQLGFLRALPDVGPEQGQSYEFFHLTLQAFFTAFFLVADDKVSTRELLRFFREWTSPGEATSSSCHS
SFFSFQCLGGRSRLGPDPFRNKDHFQFTNLFLCGLLAKARQKLLRQLVPKAILRRKRKALWAHLFASLRS
YLKSLPRVQSGGFNQVHAMPTFLWMLRCIYETQSQKVGRLAARGISADYLKLAFCNACSADCSALSFVLH
HFHRQLALDLDNNNLNDYGVQELQPCFSRLTVIRLSVNQITDTGVKVLCEELTKYKIVTFLGLYNNQITD
IGARYVAQILDECRGLKHLKLGKNRITSEGGKCVALAVKNSTSIVDVGMWGNQIGDEGAKAFAEALKDHP
SLTTLSLAFNGISPEGGKSLAQALKQNTTLTVIWLTKNELNDESAECFAEMLRVNQTLRHLWLIQNRITA
KGTAQLARALQKNTAITEICLNGNLIKPEEAKVFENEKRIICF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH