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Report for CCDS87890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87890.1 Public Mus musculus 1 Rgl1 23 108 98 CCDS HistoryNCBI Gene:19731Re-query CCDS DB by CCDS ID:87890.1Re-query CCDS DB by GeneID:19731See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111857.2 ENSMUSP00000107488.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111857.2Link to Ensembl Protein Viewer:ENSMUSP00000107488.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111857Re-query CCDS DB by Protein ID:ENSMUSP00000107488
Original member Current member NCBI NM_001346119.1 NP_001333048.1 Accepted alive Link to Nucleotide Sequence:NM_001346119.1Link to Protein Sequence:NP_001333048.1Re-query CCDS DB by Nucleotide ID:NM_001346119Re-query CCDS DB by Protein ID:NP_001333048Link to BLAST:NP_001333048.1

Chromosomal Locations for CCDS 87890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152519009 152519196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152521295 152521409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152524645 152524899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152528273 152528459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152531506 152531595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152533506 152533627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152536267 152536299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152537731 152537817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152539937 152540026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152544351 152544435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152549067 152549170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152552421 152552636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152554296 152554420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152557403 152557587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152571598 152571675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152586407 152586615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152674860 152674991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGGAGGGGACATCTGTGGGAGAGCCTACTCAAGTGGTGTCTAAAGTCAAACTTTCCACAAAAGGAGAAA
ACACAGGACACTGGCTGGTGGATGATCATGCTCGAATATGGGAAGTTTTGAAGACAGAGGAGGTTGAAGG
GGACCAGCTGCCTCCAGGACACACAGTCAGTCAGTACGAGACCTGCAAGATCAGGACCATCAAAGCTGGT
ACGCTGGAGAAGCTTGTGGAGAACCTGCTGACGGCTTTTGGGGACAATGACTTTACCTACATCAGCATCT
TTTTGTCGACATACAGAGGCTTTGCCTCGACTAAGGAAGTGCTGGAGCTGCTGCTGGACAGGTATGGAAA
CCTGACAGGCCCAAACTGTGAAGACGATGGAAGCCAAAGTTCACCCGAGTCCAAGGCCGTGATCCGGAAT
GCCATTGCTTCCATCCTGAGGGCCTGGCTTGACCAGTGTGCGGAAGACTTCCGGGAGCCCCCTCACTTCC
CTTGCCTTCAGAAGCTGCTGGAGTACCTCAAACAGATGATGCCTGGCTCTGACCCAGAGAGGAGAGCACA
GAACCTTCTTGAACAGTTTCAAAAGCAGGACGTGGATTCCGACAATGGACTTCTCAACACCAGCTCCTTC
AGCCTGGAAGAGGAAGAGGAACTGGAGAGCGGAGGGTCAGCAGAATTCACGAACTTCTCAGAAGATCTCG
TGGCAGAACAGCTGACCTACATGGACGCACAACTATTCAAGAAGGTAGTGCCTCACCATTGCCTGGGCTG
TATTTGGTCTCAGCGGGATAAAAAGGAAAACAAGCATTTGGCTCCTACGATCCGTGCCACCATCTCTCAG
TTTAATACGCTCACCAAGTGTGTTGTCAGCACCGTCCTGGGGAGCAAGGAACTCAAAACTCAGCAGCGAG
CCAGAGTCATCGAGAAGTGGATCAACATTGCTCACGAATGTAGAATCCTGAAGAATTTTTCCTCCTTGAG
GGCCATCGTTTCCGCACTGCAGTCTAATTCCATCTATCGGTTGAAAAAGGCTTGGGCTGCTGTCCCGAAG
GACAGAATGCTGATGTTTGAAGAACTTTCAGATATCTTCTCTGATCACAATAACCATCTAACCAGTCGGG
AGCTACTAATGAAGGAAGGAACTTCAAAATTTGCAAACCTGGACAGCAGCGTGAAAGAAAACCAGAAGCG
GACCCAGAGGCGCCTGCAACTGCAGAAGGATATGGGTGTGATGCAGGGTACCGTGCCTTACCTGGGCACC
TTCCTGACTGACCTGACCATGCTGGACACTGCCCTGCAGGACTACATTGAGGGTGGACTGATCAACTTCG
AGAAAAGAAGAAGGGAATTTGAAGTCATTGCCCAGATAAAGCTCCTACAGTCTGCTTGCAACAGCTACTG
CATGGGCCCAGACCAGAAGTTTATCCAGTGGTTCCAGAGGCAGCAGCTTCTATCAGAGGAGGAAAGCTAC
GCCCTCTCGTGTGAGATTGAAGCCGCTGCCGACGCCAACACCACTTCCCCTAAGCCTCGGAAAAGCATGG
TGAAGAGGCTGAGCCTGCTATTTCTGGGGTCTGACATCATCCCCGGGAGCACTCCCACCAAAGAGCAGCC
CAAGTCCGCAGCCAGTGGGAGCTCTGGGGAGAGTATGGACTCAGTCAGTGTGTCGTCCTGTGAATCAAAC
CACTCCGAGGCTGAGGAGGGCCCCGTCACACCCATGGACACACCAGATGAGCCCCAAAAGAAGCTCTCTG
AATCCTCCTCTTCCTGTTCCTCCATCCATTCCATGGACACGAATTCCTCAGGGATGTCGTCCCTAATCAA
CCCCCTGTCCTCCCCTCCAACGTGCAACAACAATCCTAAAATCCACAAGCGCTCCGTCTCCGTGACATCC
ATTACCTCCACAGTACTGCCTCCTGTTTACAATCAGCAGAACGAAGACACCTGCATCATCCGCATCAGTG
TAGAAGACAACAATGGCAACATGTACAAGAGCATCATGCTGACAAGCCAGGATAAGACCCCCGCTGTGAT
CCAGAGAGCGATGTCGAAGCACAACCTGGAGTCGGACCCCGCCGAGGAGTATGAGCTGGTGCAGGTCATC
TCGGAGGACAAAGAACTAGTGATCCCGGACTCTGCAAACGTCTTTTACGCCATGAATAGCCAAGTGAACT
TTGATTTCATTTTACGCAAAAAGAACTCGGTGGAGGAGCAGGTGAAGTTGCGCAGTCGGACCAGCCTGAC
TTTGCCCAGGACAGCTAAGCGGGGCTGCTGGAGTAACAGGCACAGCAAGATCACCCTCTGA

Translation (766 aa):
MEGTSVGEPTQVVSKVKLSTKGENTGHWLVDDHARIWEVLKTEEVEGDQLPPGHTVSQYETCKIRTIKAG
TLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTGPNCEDDGSQSSPESKAVIRN
AIASILRAWLDQCAEDFREPPHFPCLQKLLEYLKQMMPGSDPERRAQNLLEQFQKQDVDSDNGLLNTSSF
SLEEEEELESGGSAEFTNFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSQRDKKENKHLAPTIRATISQ
FNTLTKCVVSTVLGSKELKTQQRARVIEKWINIAHECRILKNFSSLRAIVSALQSNSIYRLKKAWAAVPK
DRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGT
FLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMGPDQKFIQWFQRQQLLSEEESY
ALSCEIEAAADANTTSPKPRKSMVKRLSLLFLGSDIIPGSTPTKEQPKSAASGSSGESMDSVSVSSCESN
HSEAEEGPVTPMDTPDEPQKKLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPTCNNNPKIHKRSVSVTS
ITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVI
SEDKELVIPDSANVFYAMNSQVNFDFILRKKNSVEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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