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Report for CCDS27559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27559.1 Public Mus musculus 15 Fam83h 23 108 98 CCDS HistoryNCBI Gene:105732Re-query CCDS DB by CCDS ID:27559.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27559.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060807.11 ENSMUSP00000059839.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060807.11Link to Ensembl Protein Viewer:ENSMUSP00000059839.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060807Re-query CCDS DB by Protein ID:ENSMUSP00000059839
Original member Current member EBI ENSMUST00000170153.1 ENSMUSP00000126453.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170153.1Link to Ensembl Protein Viewer:ENSMUSP00000126453.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170153Re-query CCDS DB by Protein ID:ENSMUSP00000126453
Original member Current member NCBI NM_001168253.1 NP_001161725.1 Accepted alive Link to Nucleotide Sequence:NM_001168253.1Link to Protein Sequence:NP_001161725.1Re-query CCDS DB by Nucleotide ID:NM_001168253Re-query CCDS DB by Protein ID:NP_001161725Link to BLAST:NP_001161725.1
Original member Current member NCBI NM_134087.2 NP_598848.2 Accepted alive Link to Nucleotide Sequence:NM_134087.2Link to Protein Sequence:NP_598848.2Re-query CCDS DB by Nucleotide ID:NM_134087Re-query CCDS DB by Protein ID:NP_598848Link to BLAST:NP_598848.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161725.1 1209 Q148V8 1209 100% 0 0
NP_598848.2 1209 Q148V8 1209 100% 0 0

Chromosomal Locations for CCDS 27559.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76001857 76004749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76004941 76005065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76005135 76005299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76006101 76006547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3630 nt):
ATGGCCCGTCGCTCCCAGAGCAGCTCGCAGGGGGACAACCCACTGGCACCTGGGTACCTGCCACCTCACT
ACAAAGAATATTACCGCCTAGCGGTGGATGCATTGACTGAGGGTGGGCCAGAAGCCTACAACCGCTTCTT
GGCATCTGAGGGGGCACCTGACTTCCTGTGCCCTGAGGAACTGGAACACGTGAGCCGCCACCTGCAGCCC
CCACAGTATGTGGCCCGGGAACCCCCTGAAGGCACCCCATCTGATGTGGACATGGACGGGTCCTCAGGCA
CCTACTGGCCAGTGAACTCAGACCAGGCTGTGCCTGAGCTGGACCTGGGCTGGCCCCTCACATTTGGCTT
CCAAGGCACAGAGGTCACCACACTGGTACAGCCGCCGCCACCTGACAGCCCCAGCATCAAAGATGAAGCT
CGGAGGATGATCCGCTCTGCCCAGCAGGTGGTAGCTGTGGTGATGGACATGTTTACCGACGTGGATCTGC
TCAGTGAGGTGCTAGAGGCCGCTGCAAGGCGAGTCCCGGTCTACATTCTGCTGGATGAAATGAACGCCCA
GCACTTCCTAGACATGGCCGACAAGTGTCGCGTCAACCTGCATCATGTGGACTTCCTGCGTGTGCGCACA
GTGGCAGGTCCTACTTACTACTGCCGCACTGGGAAGTCTTTCAAGGGCCATCTAAAGGAGAAGTTCTTGC
TTGTGGACTGTGCCGTAGTGATGAGCGGCAGTTATAGCTTCATGTGGTCCTTCGAGAAAATCCACCGCAG
CCTGGCTCATGTGTTCCAGGGAGAGTTGGTCTCCAGCTTCGACGAAGAGTTCCGCATCCTCTTCGCACAG
TCGGAGCCACTGGTGCCCTCAGCCGGGGCGCTAGCCCGCATGGATGCCTATGCGCTAGCTCCATACTCTG
GGGCTGGGCCCCTGGTGGGCGTCCCCGGGGTTGGAGCACCAACACCTTTTTCTTTCCCTAAACGGGCGCA
CCTCCTATTCCCACCGCCCAGGGAAGAAGGCCTGGGCTTCCCCTCTTTCCTAGACCCTGACCGCCACTTC
CTGTCGGCTTTCCGCCGAGAGGAGCTGCAGAGAATGCCTGGGGGTGCTTTGGAGCCTCACACAGGGCTCC
GGCCACTGGCGCGCCCAACTGAGGCTGGGCCGTTCGGAGAGCTCGCGGGCCCCCGGGGCTTCTTCCAGTC
AAGGCACCTGGAAATGGATGCCTTCAAGCGGCATAGCTACGCAACACCCGATGGAGCTGGAGCAGTGGAG
AACTTTGCAGCGGCACGGCAGGTGTCACGACAAACATTCCTCAGTCACGGTGATGACTTCCGTTTCCAGA
CCAGCCACTTCCAACGGGACCAGCTCTATCAGCAGCATTACCAGTGGGACCCACAGTTTGCTCCTGCGCG
CCCACAGGGCCTCTTCGAGAAGCTTCGTGCAGGCCGACCTGGCTTTGCGGACCCTGATGACTTTGCCTTA
GGTGCTGGTCACCGCTTCCCAGAACTCGGTGCTGATGTGCACCAACGGCTGGAATACGTGCCATCCAGCG
CATCTCGGGAGGTACGCCACGGCTCGGATCCGGCCTTTGGACCCAGCCCCCGTGGTCTAGAGCCCAGTGG
AGCCTCGCGTCCCAATCTGGGCCAGCGTTTTCCATGCCAAGCAACCTTGAGACAAGGCCTGGACACCGCT
TCGGAGGCAGAACCTGAGCGCAGGGGCGGACCCGAGGGCCGGGCCGGGCTGCGTCACTGGCGCCTTGCCT
CCTACCTGAGCGGCTGCCACGGTGACGGTGGGGAGGAGGGTCTACCAATGGAGGCTGAGGCTTGTGAAGA
CGAGGTGCTGGCTCCCGGAGGCCGGGACCTGCTCCCCTCCGCCTTCCGCACTCCTGCAGCCTTCCCAGCT
AAGGGACCAAAGCCGGGCTCAGGAAGCGGTGGTGGTGACAGCTCCGAGCGAGAGGGCCCAGAAGAGACAA
GCCTGGCTAAGCAGGACTCCTTCCGCTCTCGCTTGAACCCGCTCATCCAGCGCAGCTCCAGGTTGCGCTC
ATCACTCATCTTTGCGTCCCAGGCTGAGGGTGCTGTTGGGACCGCAGCAGCCACCACTGAAAAAGTACAG
CTGATGCACAAAGAACAAACAGTCAGTGAAACTCTGGGTCCCAGCGGAGAGGCTGTTCGTTCCAGCGCCT
CGGCCAAAGTGGCGGAGCTCCTGGAGAAATACAAGGGCCCTGCCCGGGACCCTGGCGGTGCAGGAGGTGC
CGTCACTTCCTCCAGCCACAGCAAGGCTGTAGTGTCCCAGGCCTGGCGGGAGGAGGTGGTAGCACCAGGA
GGAGCGGGAACTGAACGCCGCAGCCTTGAGAGTTGCTTGCTTGACCTGCGCGATTCCTTTGCCCAGCAGT
TGCACCAGGAGGCAGAGCGACACCCAGGAGCCGCTTCGCTCACTGCTGCGCAACTGCTCGACACCCTGGG
CGGCACTGACCGCCTGCCATCACGCTTCCTCTCCGCCCAGGGCCGCTCCTTGTCTCCACAAGGTCGAGAT
AGCCCTCCGCCAGAAGGGCTTGGGACACACCAGCTGCCTTATTCTGAGCCAAAGGGAAACCCCACCCCAG
CTTACCCTGAGCGCAAGGGGAGCCCTACCCCAGCTTACCCTGAGCGCAAGGGGAGCCCTACCCCAGCTTA
CCCTGAGCGCAAGGGGAGCCCTACCCCAGCTTACCCTGAGCGCAAGGGGAGTCCTACCCAAGCCTACCCT
GAGCGCAAGGGGAGCCCCACGTCTGGATTTCCCAATCGGAGGGGCAGCCCAACCACAGGATTGATGGAGC
AGAAGGGAAGTCCCACTTCAACCTACCCAGACCGCAGGGGCAGTCCGGTGCCCCCAGTGCCTGAGCGCAG
GGGTAGTCCAGTACCCCCTGTGCCCGAGCGCAGAGGCAGTCTCACTTTCGCTGGGGAGTCTTCGAAGACT
GGGCCTACAGAGGAGGTGTCTAGTGGCCCCATGGAAGTCCTGCGAAAGGGTTCTCTCCGCCTCAGGCAGC
TGCTGAGCCCCAAGAATGAGAGGCGTGGGGAGGATGAGGGCAGCTTCCCAACTCCGCAGGAAAATGGGCA
GCCCGAGAGCCCCCGGCGGCCCTCGCTGAGTCGGGGTGACAGCACAGAGGCTGCTGCAGAGGAGAGAGGC
TCGAGGGTCCGCCTAGCTTCAGCTACAGCCAATGCTCTGTACAGCAGCAATCTGCGAGATGACACTAAGG
CCATTCTGGAGCAAATTAGTGCCCACGGCCAGAAGCACCGCGGGGTCCCTGCTCCAGGTCCAGCCCACAG
CAGTCCTGACGTAGGTCGTCCAACAACTGCAGGAGACTTGGCCCCAGACATGTCCGACAAGGACAAATGT
TCAGCTATCTTCCGCTCAGACAGCCTAGGGACACAAGGCCGGCTCAGCCGCACCCTGCCTGGCAGTGCAG
AGGAGCGAGACCGGCTCCTTCGCCGCATGGAGAGCATGCGCAAAGAGAAGCGTGTCTACAGTCGCTTCGA
AGTCTTCTGCAAAAAGGACGAAGCTGGCAGTAGTGGGGCAGGAGACAACTTGGCAGATGAGGACACCAGG
GACAGTAAAATGGGCAAATTTGTCCCCAAGATCCTGGGCACATTCAAAAGCAAAAAATGA

Translation (1209 aa):
MARRSQSSSQGDNPLAPGYLPPHYKEYYRLAVDALTEGGPEAYNRFLASEGAPDFLCPEELEHVSRHLQP
PQYVAREPPEGTPSDVDMDGSSGTYWPVNSDQAVPELDLGWPLTFGFQGTEVTTLVQPPPPDSPSIKDEA
RRMIRSAQQVVAVVMDMFTDVDLLSEVLEAAARRVPVYILLDEMNAQHFLDMADKCRVNLHHVDFLRVRT
VAGPTYYCRTGKSFKGHLKEKFLLVDCAVVMSGSYSFMWSFEKIHRSLAHVFQGELVSSFDEEFRILFAQ
SEPLVPSAGALARMDAYALAPYSGAGPLVGVPGVGAPTPFSFPKRAHLLFPPPREEGLGFPSFLDPDRHF
LSAFRREELQRMPGGALEPHTGLRPLARPTEAGPFGELAGPRGFFQSRHLEMDAFKRHSYATPDGAGAVE
NFAAARQVSRQTFLSHGDDFRFQTSHFQRDQLYQQHYQWDPQFAPARPQGLFEKLRAGRPGFADPDDFAL
GAGHRFPELGADVHQRLEYVPSSASREVRHGSDPAFGPSPRGLEPSGASRPNLGQRFPCQATLRQGLDTA
SEAEPERRGGPEGRAGLRHWRLASYLSGCHGDGGEEGLPMEAEACEDEVLAPGGRDLLPSAFRTPAAFPA
KGPKPGSGSGGGDSSEREGPEETSLAKQDSFRSRLNPLIQRSSRLRSSLIFASQAEGAVGTAAATTEKVQ
LMHKEQTVSETLGPSGEAVRSSASAKVAELLEKYKGPARDPGGAGGAVTSSSHSKAVVSQAWREEVVAPG
GAGTERRSLESCLLDLRDSFAQQLHQEAERHPGAASLTAAQLLDTLGGTDRLPSRFLSAQGRSLSPQGRD
SPPPEGLGTHQLPYSEPKGNPTPAYPERKGSPTPAYPERKGSPTPAYPERKGSPTPAYPERKGSPTQAYP
ERKGSPTSGFPNRRGSPTTGLMEQKGSPTSTYPDRRGSPVPPVPERRGSPVPPVPERRGSLTFAGESSKT
GPTEEVSSGPMEVLRKGSLRLRQLLSPKNERRGEDEGSFPTPQENGQPESPRRPSLSRGDSTEAAAEERG
SRVRLASATANALYSSNLRDDTKAILEQISAHGQKHRGVPAPGPAHSSPDVGRPTTAGDLAPDMSDKDKC
SAIFRSDSLGTQGRLSRTLPGSAEERDRLLRRMESMRKEKRVYSRFEVFCKKDEAGSSGAGDNLADEDTR
DSKMGKFVPKILGTFKSKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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