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Report for CCDS3739.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3739.3 Public Homo sapiens 4 PGRMC2 24 110 108 CCDS HistoryNCBI Gene:10424Re-query CCDS DB by CCDS ID:3739.3See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 3739.2
The coding region has been updated to start at a downstream in-frame start codon that is supported by transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3739.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296425.10 ENSP00000296425.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296425.10Link to Ensembl Protein Viewer:ENSP00000296425.4Re-query CCDS DB by Nucleotide ID:ENST00000296425Re-query CCDS DB by Protein ID:ENSP00000296425
Original member Current member EBI ENST00000520121.6 ENSP00000429301.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520121.6Link to Ensembl Protein Viewer:ENSP00000429301.2Re-query CCDS DB by Nucleotide ID:ENST00000520121Re-query CCDS DB by Protein ID:ENSP00000429301
Original member Current member NCBI NM_006320.6 NP_006311.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006320.6Link to Protein Sequence:NP_006311.3Re-query CCDS DB by Nucleotide ID:NM_006320Re-query CCDS DB by Protein ID:NP_006311Link to BLAST:NP_006311.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006311.3 223 O15173-1 223 100% 0 0

Chromosomal Locations for CCDS 3739.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 128271316 128271413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128272362 128272517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128287373 128287790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGCGGCTGGTGATGGGGACGTGAAGCTAGGCACCCTGGGGAGTGGCAGCGAGAGCAGCAACGACGGCG
GCAGCGAGAGTCCAGGCGACGCGGGAGCGGCAGCGGAAGGGGGAGGCTGGGCGGCGGCGGCGTTGGCGCT
TCTGACGGGGGGCGGGGAAATGCTGCTGAACGTGGCGCTGGTGGCTCTGGTGCTGCTGGGGGCCTACCGG
CTGTGGGTGCGCTGGGGGCGGCGGGGTCTGGGGGCCGGGGCCGGGGCGGGCGAGGAGAGCCCCGCCACCT
CTCTGCCTCGCATGAAGAAGCGGGACTTCAGCTTGGAGCAGCTGCGCCAGTACGACGGCTCCCGCAACCC
GCGCATCCTGCTCGCGGTCAATGGGAAAGTCTTCGACGTGACCAAAGGCAGCAAGTTCTACGGCCCGGCG
GGTCCATATGGAATATTTGCTGGTAGGGATGCCTCCAGAGGACTGGCCACATTTTGCCTAGATAAAGATG
CACTTAGAGATGAATATGATGATCTCTCAGATTTGAATGCAGTACAAATGGAGAGTGTTCGAGAATGGGA
AATGCAGTTTAAAGAAAAATATGATTATGTAGGCAGACTCCTAAAACCAGGAGAAGAACCATCAGAATAT
ACAGATGAAGAAGATACCAAGGATCACAATAAACAGGATTGA

Translation (223 aa):
MAAGDGDVKLGTLGSGSESSNDGGSESPGDAGAAAEGGGWAAAALALLTGGGEMLLNVALVALVLLGAYR
LWVRWGRRGLGAGAGAGEESPATSLPRMKKRDFSLEQLRQYDGSRNPRILLAVNGKVFDVTKGSKFYGPA
GPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGEEPSEY
TDEEDTKDHNKQD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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